Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20715
         (696 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.15c |||sphingosine hydroxylase |Schizosaccharomyces pomb...    27   2.6  
SPAC57A10.07 |||conserved protein |Schizosaccharomyces pombe|chr...    26   5.9  
SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces pomb...    26   5.9  

>SPBC887.15c |||sphingosine hydroxylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 293

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 9/34 (26%), Positives = 16/34 (47%)
 Frame = +2

Query: 365 PSASLEVATPPQIYSRIWFLVTRWERIWLRFLHF 466
           P  +     P   Y   +F++  W+  W R+LH+
Sbjct: 121 PKLAYNFIVPAFQYFFAFFIIDSWQYFWHRYLHY 154


>SPAC57A10.07 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 311

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +1

Query: 577 LPRFSIQTQN*SETYWHVTSQRERTRSSIVAIRVGTCI 690
           LP ++ QT + S  +W V S + RT  ++ A  +  CI
Sbjct: 10  LPFYATQTAS-SSRFWRVLSPKSRTGIALYASLILLCI 46


>SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 478

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 15/48 (31%), Positives = 21/48 (43%)
 Frame = -3

Query: 505 RPWRWASELNSTFEMKKPEPYSFPPRNEKPNAGVDLRGRSNLKTRTRR 362
           RP  +AS           +P + PP   K +   DLR  S+ + R RR
Sbjct: 196 RPVNFASHAKQCPSFLAMDPNNIPPEINKVSPHDDLRPLSDSRRRARR 243


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,738,916
Number of Sequences: 5004
Number of extensions: 53430
Number of successful extensions: 126
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)