Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20715
         (696 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31410| Best HMM Match : PDZ (HMM E-Value=1.1e-15)                   43   3e-04
SB_24578| Best HMM Match : rve (HMM E-Value=4.8e-35)                   37   0.014
SB_53949| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.22 
SB_25834| Best HMM Match : PDZ (HMM E-Value=9.4e-09)                   30   1.6  
SB_54821| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  

>SB_31410| Best HMM Match : PDZ (HMM E-Value=1.1e-15)
          Length = 556

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 25/65 (38%), Positives = 41/65 (63%)
 Frame = +3

Query: 417 GFSLRGGKEYGSGFFISKVEFNSEAHLQGLKSVNSWLALMDIE*MMQSTEN*FTTSLLNP 596
           GFS+RGG+E+G G +IS+V+ +S+A  QGL   +  + +  I+   Q  +N    +LL+ 
Sbjct: 142 GFSIRGGREHGCGVYISQVDSDSQAEKQGLHLGDQIIEVNGID-FEQIAQN-SAINLLSS 199

Query: 597 DSKLK 611
            SK+K
Sbjct: 200 LSKMK 204


>SB_24578| Best HMM Match : rve (HMM E-Value=4.8e-35)
          Length = 1772

 Score = 37.1 bits (82), Expect = 0.014
 Identities = 16/43 (37%), Positives = 26/43 (60%)
 Frame = +3

Query: 414  FGFSLRGGKEYGSGFFISKVEFNSEAHLQGLKSVNSWLALMDI 542
            FGF +RGG E+G G ++S ++  S +   GL   +  LA+ D+
Sbjct: 1255 FGFCMRGGSEHGVGLYVSSIDTGSVSEAIGLLPGDHILAVNDV 1297



 Score = 33.9 bits (74), Expect = 0.13
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = +3

Query: 417  GFSLRGGKEYGSGFFISKVEFNSEAHLQGLK 509
            G  +RGG EYG G +I+ V+ +S A   GLK
Sbjct: 1321 GLKIRGGAEYGLGIYIAGVDEHSAASRAGLK 1351



 Score = 28.3 bits (60), Expect = 6.3
 Identities = 11/51 (21%), Positives = 24/51 (47%)
 Frame = +2

Query: 515  EQLVSVNGYRVDDAVHGELIHYLASQSRLKIKVRHIGMLPVKEKGHEALSW 667
            +Q++ VNG    +  H   I  L +   + + ++ +G LP+ +   +   W
Sbjct: 1354 DQIMDVNGTSFLNISHASAIKALKANKNMMVTIKDVGRLPLAKTTTDKTRW 1404


>SB_53949| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1149

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -3

Query: 511  DFRPWRWASELNSTFEMKKPEPYSFPPR 428
            D R W+WA E +S FE+ KP  + +P R
Sbjct: 1082 DRRVWKWAIEQSSCFELLKPFIFGYPGR 1109


>SB_25834| Best HMM Match : PDZ (HMM E-Value=9.4e-09)
          Length = 86

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 13/32 (40%), Positives = 22/32 (68%)
 Frame = +3

Query: 414 FGFSLRGGKEYGSGFFISKVEFNSEAHLQGLK 509
           +GF L+GGK++ +   I+KVE  S+A   G++
Sbjct: 17  WGFRLQGGKDFRAPLKIAKVEQGSKAERAGIR 48


>SB_54821| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 528

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +2

Query: 329 VGTGSGSDFNGTPSASLEVATPPQ-IYSRIWFL 424
           VGT  G + +GTP+A   V T P+ I  + WF+
Sbjct: 364 VGTVLGRNLSGTPNAPCRVNTVPRPIPEKKWFM 396


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,899,097
Number of Sequences: 59808
Number of extensions: 361755
Number of successful extensions: 895
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 893
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)