Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20715
         (696 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g25970.1 68416.m03236 pentatricopeptide (PPR) repeat-containi...    28   5.1  
At1g10090.1 68414.m01137 expressed protein                             28   5.1  
At5g24110.1 68418.m02833 WRKY family transcription factor              28   6.8  
At1g12250.1 68414.m01417 thylakoid lumenal protein-related weak ...    27   9.0  

>At3g25970.1 68416.m03236 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 646

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -3

Query: 451 EP-YSFPPRNEKPNAGVDLRGRSNLKTRTRRSVEVTP 344
           EP Y   PR E   A VDL GR+ L  + +  +E  P
Sbjct: 482 EPVYKIQPRMEHYAAAVDLLGRAGLVNKAKELIESMP 518


>At1g10090.1 68414.m01137 expressed protein 
          Length = 762

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +1

Query: 1   VHSNALLQYSRLRFSTTGSQRRGCLNSVSSMLLPDKRVL 117
           +H+N  + YS++   +  S + GC +  S   LPD   L
Sbjct: 676 IHNNLKVAYSQIPTCSEESSKAGCTSPCSDQELPDSEEL 714


>At5g24110.1 68418.m02833 WRKY family transcription factor
          Length = 303

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +2

Query: 281 RNQNVRYFNGFNYDIRVGTGSGSDFNGTPSASLEVATPP 397
           R+QN+ YF   ++   +GT    +F  + SAS   +  P
Sbjct: 239 RDQNIEYFGSTSFSSDLGTSINYNFPASGSASHSASNSP 277


>At1g12250.1 68414.m01417 thylakoid lumenal protein-related weak
           similarity to SP|O22160 Thylakoid lumenal 15 kDa
           protein, chloroplast precursor (p15) {Arabidopsis
           thaliana}; contains Pfam profile PF00805: Pentapeptide
           repeats (8 copies)
          Length = 280

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +2

Query: 263 LSSWIDRNQNVRYFNGFNYDIRVGTGSGSDFNG 361
           LS  +  N+N R  N  + D+R    SGS FNG
Sbjct: 116 LSKTVHSNENFRRANFTSADMRESDFSGSTFNG 148


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,059,289
Number of Sequences: 28952
Number of extensions: 270598
Number of successful extensions: 702
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)