Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20714
(756 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch... 113 2e-26
SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyce... 33 0.044
SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomy... 27 2.2
SPCC2H8.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 27 2.9
SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S... 27 2.9
SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy... 26 5.0
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 5.0
SPCC1884.02 |nic1|SPCC757.01|NiCoT heavy metal ion transporter N... 26 6.7
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom... 26 6.7
SPBC428.17c |||conserved fungal protein|Schizosaccharomyces pomb... 25 8.8
>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 312
Score = 113 bits (273), Expect = 2e-26
Identities = 53/94 (56%), Positives = 70/94 (74%)
Frame = +1
Query: 229 GKKHYDAQSIKDHLDNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGA 408
GK ++++ +++ P LE+LLP ++GNVGFVFT DL EVR+ ++ N + APARP A
Sbjct: 54 GKNTMIRRAMRGIINDMPELERLLPVVRGNVGFVFTNADLKEVRETIIANVIAAPARPNA 113
Query: 409 IAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISR 510
IAPL V +PA NTG+ P KTSFFQAL IPTKI+R
Sbjct: 114 IAPLDVFVPAGNTGMEPGKTSFFQALGIPTKITR 147
Score = 69.3 bits (162), Expect = 5e-13
Identities = 32/53 (60%), Positives = 40/53 (75%)
Frame = +3
Query: 492 PYQNFKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSG 650
P + +GTIEI +DVH++ KVG SEATLLNMLNISPF+YG+ V +YD G
Sbjct: 142 PTKITRGTIEITSDVHLVSKDAKVGPSEATLLNMLNISPFTYGMDVLTIYDQG 194
Score = 62.5 bits (145), Expect = 6e-11
Identities = 27/57 (47%), Positives = 40/57 (70%)
Frame = +2
Query: 92 KSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKASK 262
K+ YF K+ L ++Y F+V DNV SQQM +R LRG++ ++MGKNTM+R+A +
Sbjct: 8 KAQYFEKLRSLFEKYNSLFVVNIDNVSSQQMHTVRKQLRGTAELIMGKNTMIRRAMR 64
Score = 31.9 bits (69), Expect = 0.10
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +2
Query: 650 NIFAPEILDIKPEDLRAKFQAGVANVAALSL 742
N+F+PEILD+ EDL + + + A+SL
Sbjct: 195 NVFSPEILDVSEEDLIGHLLSAASIITAISL 225
>SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 241
Score = 33.1 bits (72), Expect = 0.044
Identities = 26/61 (42%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Frame = +1
Query: 259 KDHLDNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAP-ARPGAIAPLSVVIP 435
++H +N L KLL G VG +FT EV E+ VQ AR GA+AP + VIP
Sbjct: 83 EEHAENVSKLTKLL---HGAVGLLFTNSKPDEVIG-YFESFVQNDFARAGAVAPFTHVIP 138
Query: 436 A 438
A
Sbjct: 139 A 139
>SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 794
Score = 27.5 bits (58), Expect = 2.2
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Frame = +3
Query: 495 YQNFKGTIEII-NDVHILKPGDKVGASEATLLNM-LNISPFSYGLVVKQVYDSGIFLHLK 668
+ N++G I I N + I + D V + L + NIS S LVV QV+ + + +L
Sbjct: 339 FVNYRGEITTIKNAISIHEEDDGVLFKYSDLRDRNANISARSIKLVVSQVFTAANYEYLV 398
Query: 669 FW 674
+W
Sbjct: 399 YW 400
>SPCC2H8.04 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 266
Score = 27.1 bits (57), Expect = 2.9
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +3
Query: 531 DVHILKPGDKVGASEA-TLLNMLNISPFSYGLVVKQVYDSGIFLHLKFWTSNQRIS 695
DV I KP K ++ ++ N + Y LV D+ FL KFW +QRIS
Sbjct: 107 DVGITKPHTKTKKLKSNSIFNYVRNGEVLYHLVSTTGGDT--FLRPKFWPQSQRIS 160
>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 27.1 bits (57), Expect = 2.9
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -2
Query: 365 LSRTSTRSPRVNTKPTLPLMCGNSFSRAGLLSR 267
L +T +S + PTLP + + S +G+LSR
Sbjct: 35 LKQTVLQSSSFKSFPTLPRLAARNISNSGILSR 67
>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 421
Score = 26.2 bits (55), Expect = 5.0
Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Frame = -2
Query: 461 SGPRPVLWAGMTTDNGAMAPGRAGAWTLFSNSLSRTSTRSPR---VNTKPTLPLMCGNSF 291
+G PV + + G++ P AGAW L N L T + +NT P PL G F
Sbjct: 138 NGGVPVYVPIIPPEEGSVKPVSAGAWKLDMNKLRNAITEKTKMIVINT-PHNPL--GKIF 194
Query: 290 SRAGL 276
S L
Sbjct: 195 SEEEL 199
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.2 bits (55), Expect = 5.0
Identities = 15/67 (22%), Positives = 30/67 (44%)
Frame = +2
Query: 254 ASKTTWTTIQPSRNCCHTSRATLASCSPAETSLRSVTNCWRTKSRLQLVPVPLPHCQSSF 433
+S T T+ + C TS + L + +P ++ + TNC T + + P+ +
Sbjct: 517 SSSTPVTSTPVTTTNCTTSTSVLYTSTPVTSTPLATTNC-TTSTSVPYTSTPVTSSNYTI 575
Query: 434 PPTTPAS 454
+TP +
Sbjct: 576 SSSTPVT 582
>SPCC1884.02 |nic1|SPCC757.01|NiCoT heavy metal ion transporter
Nic1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 405
Score = 25.8 bits (54), Expect = 6.7
Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Frame = -3
Query: 643 SYTCLTTRPYENGEMFNMLRRVASEAPTLSPGFKMCTSLMISIVPLK--FW*GWKELGRK 470
SY+ T PY + ++++ S + G L+IS+ P++ FW G L
Sbjct: 268 SYSSGETNPYFSRLYYSIILTFVSVIAAFTIGIIQMLMLIISVHPMESTFWNGLNRLS-D 326
Query: 469 RFSLDRGRCCG 437
+ + G CG
Sbjct: 327 NYEIVGGCICG 337
>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1325
Score = 25.8 bits (54), Expect = 6.7
Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Frame = -2
Query: 524 DFNSTLEILVGMERAWKKEVF-SGPRPVLWAGMTTDNGAMAPGRAGAWTLFSNSL-SRTS 351
D + E +G + +W F S P+P G+T D+ + PG+ +++F + ++
Sbjct: 670 DVEPSTEQNIGGDVSWGASTFQSKPQPSFSFGLTLDDKSNTPGK--NFSIFGKTAETQVE 727
Query: 350 TRSPRVN--TKP 321
+ P N TKP
Sbjct: 728 QKKPENNVLTKP 739
>SPBC428.17c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 602
Score = 25.4 bits (53), Expect = 8.8
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 410 LPHCQSSFPPTTPASVQRKPLSSKLFPSLPKFQGYY 517
L HC + P A Q KPL S+ + SL KF+ ++
Sbjct: 532 LSHCFLNDPK---AFAQLKPLISQFYESLHKFKNFH 564
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,519,814
Number of Sequences: 5004
Number of extensions: 78017
Number of successful extensions: 230
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 230
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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