Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20714
(756 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0215 - 1714224-1714364,1714795-1715187,1715279-1715377,171... 101 5e-22
12_01_0211 - 1601129-1601272,1601670-1602062,1602142-1602240,160... 101 6e-22
11_01_0210 - 1647922-1648065,1648459-1648851,1648930-1649028,164... 101 6e-22
11_01_0676 - 5511755-5511831,5512857-5513052,5513462-5513577,551... 35 0.080
06_01_0349 + 2529279-2530446,2532232-2533036,2533066-2533106,253... 35 0.080
11_01_0033 - 251730-251855,252068-252144,252228-252318,252644-25... 33 0.25
12_01_0032 - 266954-267079,267204-267245,267290-267366,267450-26... 32 0.43
11_06_0266 - 21791757-21792982,21793154-21793178 32 0.43
02_01_0561 + 4120268-4120339,4121462-4121588,4121715-4121770,412... 31 0.75
06_03_1180 + 28218386-28218649,28218725-28219202,28219309-282196... 31 1.3
02_01_0348 - 2506007-2506909,2507003-2508120,2508230-2508883,250... 31 1.3
06_01_0090 - 724296-724532,724756-724938,725038-725088,725520-72... 30 1.7
11_01_0355 + 2679561-2680985,2681183-2682295 29 4.0
03_03_0258 - 15905847-15905990,15906088-15906244,15906374-159065... 29 4.0
12_02_0709 - 22359705-22360292,22360396-22360560,22360650-223611... 29 5.3
11_06_0269 - 21800104-21800655,21800824-21801370,21801398-21801513 29 5.3
06_01_0486 - 3455030-3455770 29 5.3
07_03_0196 + 14995224-14995489,14995859-14995877,14996703-149968... 28 7.0
03_04_0243 + 19298293-19299117 28 7.0
11_06_0271 - 21804629-21805836,21805997-21806015 28 9.2
07_03_0396 + 17672009-17672339,17672408-17673087 28 9.2
04_04_1641 + 34993807-34994589,34994924-34995022,34995521-349956... 28 9.2
03_02_0600 - 9748382-9748933,9749805-9749840,9751164-9751218,975... 28 9.2
>08_01_0215 -
1714224-1714364,1714795-1715187,1715279-1715377,
1716248-1716316,1716408-1716665
Length = 319
Score = 101 bits (243), Expect = 5e-22
Identities = 50/96 (52%), Positives = 67/96 (69%), Gaps = 2/96 (2%)
Frame = +1
Query: 229 GKKHYDAQSIKDHLDN--NPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARP 402
GK + IK H DN N +L+P + GNVG +FT+GDL EVR+++ + KV APAR
Sbjct: 57 GKNTLIRRCIKVHADNTGNKEFLELMPLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARV 116
Query: 403 GAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISR 510
G +AP+ VV+P NTGL P +TSFFQ L+IPTKI++
Sbjct: 117 GLVAPVDVVVPPGNTGLDPSQTSFFQVLNIPTKINK 152
Score = 72.9 bits (171), Expect = 2e-13
Identities = 37/64 (57%), Positives = 44/64 (68%)
Frame = +2
Query: 71 REDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMR 250
+ KA K Y K+ QLLDEY K I ADNVGS Q+Q+IR LRG SIVLMGKNT++R
Sbjct: 4 KRTKAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLIR 63
Query: 251 KASK 262
+ K
Sbjct: 64 RCIK 67
Score = 68.5 bits (160), Expect = 5e-12
Identities = 31/48 (64%), Positives = 37/48 (77%)
Frame = +3
Query: 507 KGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSG 650
KGT+EII V ++K GDKVG+SE+ LL L I PFSYGLV+ VYDSG
Sbjct: 152 KGTVEIITPVELIKKGDKVGSSESALLAKLGIRPFSYGLVITNVYDSG 199
Score = 40.3 bits (90), Expect = 0.002
Identities = 16/33 (48%), Positives = 27/33 (81%)
Frame = +2
Query: 650 NIFAPEILDIKPEDLRAKFQAGVANVAALSLAL 748
++F+PE+LD+ +DL KF +GV+ VA++SLA+
Sbjct: 200 SVFSPEVLDLTEDDLMEKFASGVSMVASVSLAI 232
>12_01_0211 -
1601129-1601272,1601670-1602062,1602142-1602240,
1602920-1602988,1603071-1603328
Length = 320
Score = 101 bits (242), Expect = 6e-22
Identities = 50/96 (52%), Positives = 67/96 (69%), Gaps = 2/96 (2%)
Frame = +1
Query: 229 GKKHYDAQSIKDHLDN--NPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARP 402
GK + IK H DN N +L+P + GNVG +FT+GDL EVR+++ + KV APAR
Sbjct: 57 GKNTLIRRCIKVHADNTGNKDFLELMPLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARV 116
Query: 403 GAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISR 510
G +AP+ VV+P NTGL P +TSFFQ L+IPTKI++
Sbjct: 117 GLVAPVDVVVPPGNTGLDPSQTSFFQVLNIPTKINK 152
Score = 72.9 bits (171), Expect = 2e-13
Identities = 37/64 (57%), Positives = 44/64 (68%)
Frame = +2
Query: 71 REDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMR 250
+ KA K Y K+ QLLDEY K I ADNVGS Q+Q+IR LRG SIVLMGKNT++R
Sbjct: 4 KRTKAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLIR 63
Query: 251 KASK 262
+ K
Sbjct: 64 RCIK 67
Score = 68.5 bits (160), Expect = 5e-12
Identities = 31/48 (64%), Positives = 37/48 (77%)
Frame = +3
Query: 507 KGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSG 650
KGT+EII V ++K GDKVG+SE+ LL L I PFSYGLV+ VYDSG
Sbjct: 152 KGTVEIITPVELIKKGDKVGSSESALLAKLGIRPFSYGLVITNVYDSG 199
Score = 41.5 bits (93), Expect = 7e-04
Identities = 17/33 (51%), Positives = 27/33 (81%)
Frame = +2
Query: 650 NIFAPEILDIKPEDLRAKFQAGVANVAALSLAL 748
++F+PE+LD+ EDL KF +GV+ VA++SLA+
Sbjct: 200 SVFSPEVLDLTEEDLMEKFASGVSMVASVSLAI 232
>11_01_0210 -
1647922-1648065,1648459-1648851,1648930-1649028,
1649706-1649774,1649877-1650134
Length = 320
Score = 101 bits (242), Expect = 6e-22
Identities = 50/96 (52%), Positives = 67/96 (69%), Gaps = 2/96 (2%)
Frame = +1
Query: 229 GKKHYDAQSIKDHLDN--NPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARP 402
GK + IK H DN N +L+P + GNVG +FT+GDL EVR+++ + KV APAR
Sbjct: 57 GKNTLIRRCIKVHADNTGNKDFLELMPLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARV 116
Query: 403 GAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISR 510
G +AP+ VV+P NTGL P +TSFFQ L+IPTKI++
Sbjct: 117 GLVAPVDVVVPPGNTGLDPSQTSFFQVLNIPTKINK 152
Score = 72.9 bits (171), Expect = 2e-13
Identities = 37/64 (57%), Positives = 44/64 (68%)
Frame = +2
Query: 71 REDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMR 250
+ KA K Y K+ QLLDEY K I ADNVGS Q+Q+IR LRG SIVLMGKNT++R
Sbjct: 4 KRTKAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLIR 63
Query: 251 KASK 262
+ K
Sbjct: 64 RCIK 67
Score = 68.5 bits (160), Expect = 5e-12
Identities = 31/48 (64%), Positives = 37/48 (77%)
Frame = +3
Query: 507 KGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSG 650
KGT+EII V ++K GDKVG+SE+ LL L I PFSYGLV+ VYDSG
Sbjct: 152 KGTVEIITPVELIKKGDKVGSSESALLAKLGIRPFSYGLVITNVYDSG 199
Score = 41.5 bits (93), Expect = 7e-04
Identities = 17/33 (51%), Positives = 27/33 (81%)
Frame = +2
Query: 650 NIFAPEILDIKPEDLRAKFQAGVANVAALSLAL 748
++F+PE+LD+ EDL KF +GV+ VA++SLA+
Sbjct: 200 SVFSPEVLDLTEEDLMEKFASGVSMVASVSLAI 232
>11_01_0676 -
5511755-5511831,5512857-5513052,5513462-5513577,
5513752-5514597,5515515-5515766,5522344-5525206
Length = 1449
Score = 34.7 bits (76), Expect = 0.080
Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 9/89 (10%)
Frame = +1
Query: 253 SIKDHLDNNPALEKL-LPH--IKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLS 423
S+ L N AL+KL LPH ++GN+GF+ + + ++ D +L++ A P + LS
Sbjct: 391 SVPRTLGNIAALQKLVLPHNNLEGNMGFLSSLSECRQLEDLILDHNSFVGALPDHLGNLS 450
Query: 424 V----VIPAHN--TGLGPEKTSFFQALSI 492
I HN G PEK S +L +
Sbjct: 451 ARLISFIADHNKLAGSLPEKMSNLSSLEL 479
>06_01_0349 +
2529279-2530446,2532232-2533036,2533066-2533106,
2533219-2533424
Length = 739
Score = 34.7 bits (76), Expect = 0.080
Identities = 21/61 (34%), Positives = 31/61 (50%)
Frame = +2
Query: 233 KNTMMRKASKTTWTTIQPSRNCCHTSRATLASCSPAETSLRSVTNCWRTKSRLQLVPVPL 412
K+ MM ++W +QP +R L S + LR+V WR+ +RLQ +P PL
Sbjct: 392 KSCMMAAVQSSSWADLQPELLGLVLTR--LPSLAD-RVRLRAVCRPWRSNARLQPLPPPL 448
Query: 413 P 415
P
Sbjct: 449 P 449
>11_01_0033 -
251730-251855,252068-252144,252228-252318,252644-252704,
252800-252858,252955-253045,253238-253406,253760-253787
Length = 233
Score = 33.1 bits (72), Expect = 0.25
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Frame = +2
Query: 29 KFHRSPYATLSRMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLR 208
K R+ TLS+ ++ K I ++ Y ++ DN+ +Q+++ +R L+
Sbjct: 3 KSKRNRPVTLSKTKKKPGLERKGKVVTDIKDAVEHYANAYVFTYDNMRNQKLKDLREQLK 62
Query: 209 GSS-IVLMGKNTM 244
SS I L GK M
Sbjct: 63 SSSRIFLAGKKVM 75
>12_01_0032 -
266954-267079,267204-267245,267290-267366,267450-267540,
267864-267924,268021-268079,268176-268266,268481-268698,
268818-268824,269013-269148,270064-270307
Length = 383
Score = 32.3 bits (70), Expect = 0.43
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = +2
Query: 41 SPYATLSRMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSS- 217
S TLS+ ++ K I ++ Y ++ DN+ +Q+++ +R L+ SS
Sbjct: 143 SSAVTLSKTKKKPGLERKGKVVTDIKDAVEHYANAYVFTYDNMRNQKLKDLREQLKSSSR 202
Query: 218 IVLMGKNTM 244
I L GK M
Sbjct: 203 IFLAGKKVM 211
>11_06_0266 - 21791757-21792982,21793154-21793178
Length = 416
Score = 32.3 bits (70), Expect = 0.43
Identities = 22/62 (35%), Positives = 27/62 (43%)
Frame = +2
Query: 230 GKNTMMRKASKTTWTTIQPSRNCCHTSRATLASCSPAETSLRSVTNCWRTKSRLQLVPVP 409
GK T+ R+A + +W I R L S LRSV WR +RL P P
Sbjct: 4 GKGTIGREAQRRSWADIPADIIGVVVGR--LPSVED-RARLRSVCQAWRAAARLHRPPPP 60
Query: 410 LP 415
LP
Sbjct: 61 LP 62
>02_01_0561 +
4120268-4120339,4121462-4121588,4121715-4121770,
4121841-4121912,4122017-4122128,4122247-4122284,
4122412-4122513,4122619-4122675,4122755-4122826,
4122992-4123093,4123210-4123405,4123988-4124094,
4124497-4124691,4124771-4124857,4124905-4124913,
4125599-4125703,4126067-4126164,4126250-4126328,
4126912-4127000,4127086-4127200
Length = 629
Score = 31.5 bits (68), Expect = 0.75
Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Frame = +1
Query: 280 PALEK-LLPHIKGN---VGFVFTRGDLVEV--RDKLLENKVQAPARPGAIAPLSVVIPA 438
PAL+K L H K VG + T GDL + + L+++KV P PGA+ +S + PA
Sbjct: 131 PALDKDALWHFKPEKLGVGDIITGGDLYAIVNENTLMQHKVALP--PGAMGKISYIAPA 187
>06_03_1180 +
28218386-28218649,28218725-28219202,28219309-28219697,
28219785-28220426,28220466-28221368
Length = 891
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = -3
Query: 676 VQNFRCKNIPESYTCLTTRPYENGEMFNMLRRVASEAPTLSPGFKMCTSLMI 521
V NF C+++ E + L RP +G L + + P+ P F + + L+I
Sbjct: 200 VSNFSCRDLVEEFVLLKIRPLSSGWDIT-LGEIPEDCPSSLPPFVVSSDLVI 250
>02_01_0348 -
2506007-2506909,2507003-2508120,2508230-2508883,
2508920-2509046
Length = 933
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = -3
Query: 676 VQNFRCKNIPESYTCLTTRPYENGEMFNMLRRVASEAPTLSPGFKMCTSLMI 521
V NF C+++ E + L RP +G L + + P+ P F + + L+I
Sbjct: 213 VSNFSCRDLVEEFVLLKIRPLSSGWDIT-LGEIPEDCPSSLPPFVVSSDLVI 263
>06_01_0090 - 724296-724532,724756-724938,725038-725088,725520-725639,
725738-725840,726106-726264,726728-726846,726891-727004,
727119-727277,727404-727451,728464-728640,729064-729116,
729549-729661,729793-729873,729966-730081,730786-730905,
732321-732429,732593-732770,732852-732920,733102-733233,
733657-733766,733843-734003,734081-734171,734258-734355,
734499-734619,734732-734892,734985-735090,735142-735236,
735828-735852,736008-736084,736196-736282,736372-736421,
736558-736639,736735-736795,737064-737116,737206-737395,
737472-737595,737860-737962,738064-738156,740344-740422,
740508-740584,740915-741043,742614-742731,742816-742913,
743457-743546,744998-745123,745238-745351,745488-745611,
745865-746019,746104-746201,746357-746600
Length = 1926
Score = 30.3 bits (65), Expect = 1.7
Identities = 21/72 (29%), Positives = 36/72 (50%)
Frame = +1
Query: 172 LATDAADPYLATWLQYRAHGKKHYDAQSIKDHLDNNPALEKLLPHIKGNVGFVFTRGDLV 351
+++D Y + ++ HGK + SIK L NP L + P + N +FTRGD +
Sbjct: 1254 VSSDGRKEYYSKLVKADVHGKDQ-EIYSIK--LPGNPKLGEGKPENQ-NHAIIFTRGDAI 1309
Query: 352 EVRDKLLENKVQ 387
+ D +N ++
Sbjct: 1310 QTIDMNQDNYLE 1321
>11_01_0355 + 2679561-2680985,2681183-2682295
Length = 845
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = +2
Query: 269 WTTIQPSRNCCHTSRATLASCSPAETSLRSVTNCWRTKSRLQLVP 403
W ++ HTS TL+ SP+ +S+ T+C+ + + P
Sbjct: 480 WNPMRNGSAPHHTSELTLSFSSPSPSSISGYTSCYNNNNMMSSKP 524
>03_03_0258 -
15905847-15905990,15906088-15906244,15906374-15906504,
15906991-15907126,15907193-15907464,15907874-15908169,
15908279-15908646,15908922-15908987,15909064-15909129,
15909226-15909297,15909391-15909459,15909549-15909620,
15909708-15909776,15909874-15909945,15910046-15910178,
15911223-15911361
Length = 753
Score = 29.1 bits (62), Expect = 4.0
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -3
Query: 649 PESYTCLTTRPYENGEMFNMLRRVASEAPTLSPGFKMCTSL 527
PE LT RP +G+ FN LR ++ +PT G + S+
Sbjct: 358 PEKNEPLTLRPIASGK-FNQLRTISIISPTAKEGLQKTVSM 397
>12_02_0709 -
22359705-22360292,22360396-22360560,22360650-22361157,
22361159-22361577,22362261-22362722,22362853-22364415
Length = 1234
Score = 28.7 bits (61), Expect = 5.3
Identities = 22/75 (29%), Positives = 28/75 (37%)
Frame = -2
Query: 608 WRDVQHVEKGGFRSSNLVTGLQDVYIVDDFNSTLEILVGMERAWKKEVFSGPRPVLWAGM 429
WR +QH G S+NL L +Y + F L + K + W
Sbjct: 57 WRLIQHDYGDGDGSANLTPALNVLYSLALFQGVLFFYQWVSYFAGKRLIEKVASKYWQNS 116
Query: 428 TTDNGAMAPGRAGAW 384
GA A RAGAW
Sbjct: 117 KEAGGAGA--RAGAW 129
>11_06_0269 - 21800104-21800655,21800824-21801370,21801398-21801513
Length = 404
Score = 28.7 bits (61), Expect = 5.3
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +2
Query: 329 CSPAETSLRSVTNCWRTKSRLQLVPVPLP 415
C+ +RSV + WR + +Q P PLP
Sbjct: 82 CAAGRARVRSVCSSWRNAAAIQRPPRPLP 110
>06_01_0486 - 3455030-3455770
Length = 246
Score = 28.7 bits (61), Expect = 5.3
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +2
Query: 401 PVPLPHCQSSFPPTTPASVQRKPLSSKLFPSLPKF 505
P P P C S PP TP + R P + PS P +
Sbjct: 66 PPPSPRCPSCHPPYTPPT-PRPPPTPPYVPSPPPY 99
>07_03_0196 +
14995224-14995489,14995859-14995877,14996703-14996839,
14998365-14998457,15001597-15001932,15003035-15003503
Length = 439
Score = 28.3 bits (60), Expect = 7.0
Identities = 12/43 (27%), Positives = 18/43 (41%)
Frame = -1
Query: 408 GTGTSWSLDFVLQQFVTDLNEVSAGEHEANVALDVWQQFLEGW 280
G +WS F +LN +S H+ V L+ W + W
Sbjct: 197 GNAENWSSQGDKDDFYNELNTISEARHKNLVKLEGWCCHINAW 239
>03_04_0243 + 19298293-19299117
Length = 274
Score = 28.3 bits (60), Expect = 7.0
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = -2
Query: 431 MTTDNGAMAPGRAGAWTLFSNSLSRTSTRSPRVNTKPTLPLMCGNSFS 288
+ TD+ + APG A A + S SRTS +P ++ PT P +S +
Sbjct: 172 VVTDSLSRAPGAAWAAAMAPTSWSRTS--APPASSSPTSPRRARSSLT 217
>11_06_0271 - 21804629-21805836,21805997-21806015
Length = 408
Score = 27.9 bits (59), Expect = 9.2
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +2
Query: 329 CSPAETSLRSVTNCWRTKSRLQLVPVPLP 415
C+ +RSV WR + +Q P PLP
Sbjct: 32 CAADRARVRSVCRSWRAAAAIQRPPPPLP 60
>07_03_0396 + 17672009-17672339,17672408-17673087
Length = 336
Score = 27.9 bits (59), Expect = 9.2
Identities = 25/80 (31%), Positives = 34/80 (42%), Gaps = 7/80 (8%)
Frame = +2
Query: 236 NTMMRKASKTTWTTIQPSR------NCCHTSRATLASCSPAETSLRSVTNCWRTKSRLQL 397
NT++ K K TT+QP R N H A + +PAE + +N R + L
Sbjct: 120 NTVIAKTKKEQGTTVQPIRRPMADDNSSHNPSALPPTPAPAEAN-HGRSNIARDVQKSLL 178
Query: 398 VPVPLPHCQSSFP-PTTPAS 454
VPV + P P AS
Sbjct: 179 VPVSAAKVHNQKPAPRDQAS 198
>04_04_1641 +
34993807-34994589,34994924-34995022,34995521-34995648,
34996095-34996235,34996456-34996542,34996627-34996780,
34998569-34998628,34999019-34999447,34999524-34999819,
35000278-35000407,35000690-35001187
Length = 934
Score = 27.9 bits (59), Expect = 9.2
Identities = 16/34 (47%), Positives = 18/34 (52%)
Frame = +2
Query: 401 PVPLPHCQSSFPPTTPASVQRKPLSSKLFPSLPK 502
P P PH S PP P S + LSSKL P P+
Sbjct: 51 PPPPPHRPSPSPPPNPLS-SKLWLSSKLSPPPPE 83
>03_02_0600 -
9748382-9748933,9749805-9749840,9751164-9751218,
9751588-9751697,9751955-9752602
Length = 466
Score = 27.9 bits (59), Expect = 9.2
Identities = 14/38 (36%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Frame = +2
Query: 176 QQMQQIRISLRGSSIVLMGKNTMMRKASK-TTWTTIQP 286
+Q+Q IR +L + +L+ KNT++ KA + T W ++P
Sbjct: 74 KQLQGIRDTLPETCRLLVAKNTLVGKAIEGTPWEALKP 111
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,998,471
Number of Sequences: 37544
Number of extensions: 566637
Number of successful extensions: 1779
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1778
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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