Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20714
(756 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37) 138 4e-33
SB_22968| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_41135| Best HMM Match : Ribonuc_red_lgN (HMM E-Value=0.78) 30 1.8
SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 30 1.8
SB_58702| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.059) 29 3.1
SB_13374| Best HMM Match : Cornifin (HMM E-Value=0.34) 29 3.1
SB_32083| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_31430| Best HMM Match : Exo70 (HMM E-Value=2) 29 4.1
SB_47216| Best HMM Match : Oxidored_molyb (HMM E-Value=0) 29 4.1
SB_46306| Best HMM Match : 6PGD (HMM E-Value=0) 29 5.4
SB_55414| Best HMM Match : 7tm_1 (HMM E-Value=4.3e-08) 28 7.1
SB_47997| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_36524| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_10357| Best HMM Match : zf-C2H2 (HMM E-Value=9.8e-38) 28 7.1
SB_48995| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_11799| Best HMM Match : Keratin_B2 (HMM E-Value=0.69) 28 9.4
>SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37)
Length = 261
Score = 138 bits (334), Expect = 4e-33
Identities = 63/94 (67%), Positives = 77/94 (81%)
Frame = +1
Query: 229 GKKHYDAQSIKDHLDNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGA 408
GK ++I+ HL+NNP LEKLLPHIKGN+GFVFT+ DL +VR ++ENKV APA+ G
Sbjct: 38 GKNTMIRKAIRGHLENNPDLEKLLPHIKGNIGFVFTKEDLADVRKIIMENKVAAPAKAGV 97
Query: 409 IAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISR 510
IAP+ V +PA NTGLGPEKTSFFQAL+IPTKI+R
Sbjct: 98 IAPIDVFVPAGNTGLGPEKTSFFQALAIPTKIAR 131
Score = 73.7 bits (173), Expect = 1e-13
Identities = 35/46 (76%), Positives = 38/46 (82%)
Frame = +2
Query: 119 QLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKA 256
Q LDEYPK F+VG DNVGS+QMQ IR SLRG VLMGKNTM+RKA
Sbjct: 1 QYLDEYPKLFLVGVDNVGSKQMQTIRQSLRGQGEVLMGKNTMIRKA 46
Score = 33.1 bits (72), Expect = 0.25
Identities = 14/26 (53%), Positives = 20/26 (76%)
Frame = +3
Query: 492 PYQNFKGTIEIINDVHILKPGDKVGA 569
P + +GTIEIINDVH++K +K+ A
Sbjct: 126 PTKIARGTIEIINDVHLIKKDEKLKA 151
>SB_22968| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1332
Score = 31.1 bits (67), Expect = 1.0
Identities = 21/80 (26%), Positives = 36/80 (45%)
Frame = +2
Query: 251 KASKTTWTTIQPSRNCCHTSRATLASCSPAETSLRSVTNCWRTKSRLQLVPVPLPHCQSS 430
KA +TWT + +RN T ++ L +P L N + Q +PV + +C+++
Sbjct: 93 KARSSTWTRTRNARNLIDTQQSQLEMNNPQH--LHRTYNFSMMNNVRQPIPVLVNNCRAN 150
Query: 431 FPPTTPASVQRKPLSSKLFP 490
S ++ SS L P
Sbjct: 151 DKLVESQSKRKSARSSNLIP 170
>SB_41135| Best HMM Match : Ribonuc_red_lgN (HMM E-Value=0.78)
Length = 230
Score = 30.3 bits (65), Expect = 1.8
Identities = 17/39 (43%), Positives = 23/39 (58%)
Frame = -3
Query: 613 ENGEMFNMLRRVASEAPTLSPGFKMCTSLMISIVPLKFW 497
+N E + LRRV +E+ T P CTSLM +I +K W
Sbjct: 90 KNAETIDALRRVIAESYTPRP----CTSLMNAIFDIKEW 124
>SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 7381
Score = 30.3 bits (65), Expect = 1.8
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = +1
Query: 133 VPKMFHRGCR*RGLATDAADPYLAT-WLQYRAHGKKHYDAQSIK 261
VPKMFH RG+ T+A P + T +L+ R G++ +A ++
Sbjct: 3856 VPKMFHGNRDNRGIKTNAIFPTIITRYLRIRPMGRRGLNAMRVE 3899
>SB_58702| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.059)
Length = 765
Score = 29.5 bits (63), Expect = 3.1
Identities = 20/59 (33%), Positives = 28/59 (47%)
Frame = +2
Query: 332 SPAETSLRSVTNCWRTKSRLQLVPVPLPHCQSSFPPTTPASVQRKPLSSKLFPSLPKFQ 508
S + TS ++ WR K L + L SS P +TPAS+ ++ L PSL Q
Sbjct: 561 SLSPTSESAMLQNWRQKLERPLTTLKLNQPDSS-PASTPASIPESANNTPLHPSLSSKQ 618
>SB_13374| Best HMM Match : Cornifin (HMM E-Value=0.34)
Length = 1197
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -2
Query: 572 RSSNLVTGLQDVYIVDDFNSTLEI 501
R NLVT L DVYI ++ S L+I
Sbjct: 295 RDKNLVTNLSDVYIGSNYRSILDI 318
>SB_32083| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 85
Score = 29.1 bits (62), Expect = 4.1
Identities = 19/73 (26%), Positives = 28/73 (38%)
Frame = +2
Query: 161 DNVGSQQMQQIRISLRGSSIVLMGKNTMMRKASKTTWTTIQPSRNCCHTSRATLASCSPA 340
D +G QQ + ++ L L+G + R+ + T SR C + SCS
Sbjct: 1 DGIGQQQPKLYKLVLPNFGFQLIGYPGIYRQTGRGEEVTWHGSRTCTLHRKLAGVSCSCC 60
Query: 341 ETSLRSVTNCWRT 379
SL W T
Sbjct: 61 GNSLLHTHFTWTT 73
>SB_31430| Best HMM Match : Exo70 (HMM E-Value=2)
Length = 853
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/46 (28%), Positives = 27/46 (58%)
Frame = -2
Query: 599 VQHVEKGGFRSSNLVTGLQDVYIVDDFNSTLEILVGMERAWKKEVF 462
V++ EK GF +L+ L D+Y+ + + + +R+++KE+F
Sbjct: 719 VKNPEKYGFEPKSLLDRLTDIYVHLNTDEFATAVASDQRSYRKELF 764
>SB_47216| Best HMM Match : Oxidored_molyb (HMM E-Value=0)
Length = 672
Score = 29.1 bits (62), Expect = 4.1
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -2
Query: 440 WAGMTTDNGAMAPGRAGAWTLFSNSL 363
W+ T D PGRA AW+L+S +L
Sbjct: 594 WSIATLDGKDQPPGRAWAWSLWSTTL 619
>SB_46306| Best HMM Match : 6PGD (HMM E-Value=0)
Length = 870
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = -1
Query: 486 KSLEERGFLWTEAGVVGGNDD*QWG 412
K+LEERG L+ +GV GG + ++G
Sbjct: 160 KALEERGLLFVGSGVSGGEEGARYG 184
>SB_55414| Best HMM Match : 7tm_1 (HMM E-Value=4.3e-08)
Length = 595
Score = 28.3 bits (60), Expect = 7.1
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = +2
Query: 254 ASKTTWTTIQPSRNCCHTSRATLASCSPA 340
A ++ WT P C H ++ A C PA
Sbjct: 16 AGESNWTRCSPVCKCAHIDKSMAAVCRPA 44
>SB_47997| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 137
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +2
Query: 359 VTNCWRTKSRLQLVPVPLPHCQSSFPPTTPASV 457
V +C R PVP PH ++S PT P SV
Sbjct: 2 VVSCPRLFLDPMPAPVPRPHARASASPTHPTSV 34
>SB_36524| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 214
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +1
Query: 250 QSIKDHLDNNPALEKLLPHIKGNVGFVFTRGDL 348
+ +K HLDN P L K LP + G + + + GDL
Sbjct: 174 KELKSHLDNLPDLSK-LPDVDGGLAPLPSAGDL 205
>SB_10357| Best HMM Match : zf-C2H2 (HMM E-Value=9.8e-38)
Length = 509
Score = 28.3 bits (60), Expect = 7.1
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -2
Query: 377 FSNSLSRTSTRSPRVNTKPTLPLMCGNSFSRAGLLSR 267
FS+S + T KP +CG SFS++G LSR
Sbjct: 464 FSDSSTLTKRLRTHTGEKPYQCRICGMSFSQSGNLSR 500
>SB_48995| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 216
Score = 28.3 bits (60), Expect = 7.1
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +2
Query: 371 WRTKSRLQLVPVPLPHCQSSFPPT--TPASVQRKPLSSKLFPS 493
+RT+SR+ L LP+ + PP+ TP + PLS PS
Sbjct: 68 YRTRSRILLPITDLPYLGLNEPPSIATPCLIPNYPLSRLFSPS 110
>SB_11799| Best HMM Match : Keratin_B2 (HMM E-Value=0.69)
Length = 430
Score = 27.9 bits (59), Expect = 9.4
Identities = 24/105 (22%), Positives = 43/105 (40%), Gaps = 1/105 (0%)
Frame = +2
Query: 140 KCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKASKTTWTTIQPSRNCCHTSRAT 319
+C + V S +QQ +S+R + + ++ + +I+P+R C HTS
Sbjct: 51 RCCQHTSSKVLSAYVQQGVVSIRPARCCQHTSSKVLSTYVQQGVVSIRPARCCQHTSSKV 110
Query: 320 LAS-CSPAETSLRSVTNCWRTKSRLQLVPVPLPHCQSSFPPTTPA 451
L++ S+R C T S++ V + Q PA
Sbjct: 111 LSTYVQLGVVSIRPARCCQHTSSKVLSAYVQQAYVQQGVVSIRPA 155
Score = 27.9 bits (59), Expect = 9.4
Identities = 21/92 (22%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
Frame = +2
Query: 119 QLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKASKTTWTTIQPSRNC 298
++L +C + V S +QQ +S+R + + ++ + +I+P+R C
Sbjct: 204 KVLSRPARCCQHTSSKVLSAYVQQGVVSIRPARCCQHTSSKVLSAYVQQGVVSIRPARCC 263
Query: 299 CHTSRATLAS-CSPAETSLRSVTNCWRTKSRL 391
HTS L++ S+R C T S++
Sbjct: 264 QHTSSKVLSTYVQSGVVSIRPARCCQHTSSKV 295
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,825,085
Number of Sequences: 59808
Number of extensions: 612547
Number of successful extensions: 1875
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1873
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2058295707
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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