Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20714
         (756 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY705405-1|AAU12514.1|  519|Anopheles gambiae nicotinic acetylch...    27   0.83 
AB097148-1|BAC82627.1|  357|Anopheles gambiae gag-like protein p...    26   1.4  
AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcript...    26   1.4  
AF316638-1|AAG45166.1|  211|Anopheles gambiae glutathione S-tran...    23   7.7  

>AY705405-1|AAU12514.1|  519|Anopheles gambiae nicotinic
           acetylcholine receptor subunitbeta 1 protein.
          Length = 519

 Score = 26.6 bits (56), Expect = 0.83
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -1

Query: 309 DVWQQFLEGWIVVQVVFDALRIIVFFPMST 220
           D++ Q  E W  V +V D L++ +FF ++T
Sbjct: 461 DLYIQTREDWKYVAMVIDRLQLYIFFIVTT 490


>AB097148-1|BAC82627.1|  357|Anopheles gambiae gag-like protein
           protein.
          Length = 357

 Score = 25.8 bits (54), Expect = 1.4
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -3

Query: 394 LEPGLCSPTVCHGPQRGLRG*TRSQRCP*CVATVSRGLDC 275
           L+P L   T+C G   G+    ++Q C  C A V  GL+C
Sbjct: 4   LKPILSYVTLC-GEVTGVSYRGQAQTCRNCAAPVHHGLNC 42


>AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcriptase
           protein.
          Length = 973

 Score = 25.8 bits (54), Expect = 1.4
 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
 Frame = +1

Query: 157 CR*RGLATDAADPYLATWLQYRAHGK-KHYDAQSIKDH 267
           C  +G  T A  P +A W   R HG+   Y  Q + DH
Sbjct: 854 CSTKGRTTHALIPNIAAWTS-RKHGEVNFYMTQFLSDH 890


>AF316638-1|AAG45166.1|  211|Anopheles gambiae glutathione
           S-transferase D12 protein.
          Length = 211

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 250 QSIKDHLDNNPALEKLLPHIKGNVGFV 330
           Q++  HL NNP  ++ L  +K  V  V
Sbjct: 109 QAVLSHLRNNPITDEHLAKVKRGVEIV 135


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 882,051
Number of Sequences: 2352
Number of extensions: 19421
Number of successful extensions: 41
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 78170964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)