Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20714
(756 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z79754-9|CAB02098.1| 312|Caenorhabditis elegans Hypothetical pr... 127 7e-30
Z82286-2|CAB05306.1| 397|Caenorhabditis elegans Hypothetical pr... 29 3.6
Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical pr... 29 3.6
Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical pr... 29 3.6
AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein... 29 3.6
Z71177-9|CAA94868.2| 425|Caenorhabditis elegans Hypothetical pr... 29 4.7
U41264-4|AAA82424.1| 220|Caenorhabditis elegans Hypothetical pr... 29 4.7
Z29561-4|CAD91697.1| 498|Caenorhabditis elegans Hypothetical pr... 28 6.2
Z29561-2|CAD54152.1| 882|Caenorhabditis elegans Hypothetical pr... 28 6.2
Z29561-1|CAA82667.2| 861|Caenorhabditis elegans Hypothetical pr... 28 6.2
U73679-1|AAC67305.1| 861|Caenorhabditis elegans YNK1-a protein. 28 6.2
U53154-2|AAC25856.1| 358|Caenorhabditis elegans Hypothetical pr... 28 6.2
AC006770-2|AAF60593.1| 1145|Caenorhabditis elegans Hypothetical ... 28 6.2
Z71177-2|CAA94867.1| 425|Caenorhabditis elegans Hypothetical pr... 28 8.2
AF098986-3|AAC67424.1| 832|Caenorhabditis elegans Hypothetical ... 28 8.2
AC006761-8|AAF60552.2| 524|Caenorhabditis elegans Hypothetical ... 28 8.2
>Z79754-9|CAB02098.1| 312|Caenorhabditis elegans Hypothetical
protein F25H2.10 protein.
Length = 312
Score = 127 bits (307), Expect = 7e-30
Identities = 60/94 (63%), Positives = 72/94 (76%)
Frame = +1
Query: 229 GKKHYDAQSIKDHLDNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGA 408
GK ++++ HL NP+LEKLLPHI NVGFVFT+ DL E+R KLLEN+ APA+ GA
Sbjct: 56 GKNTMIRKALRGHLGKNPSLEKLLPHIVENVGFVFTKEDLGEIRSKLLENRKGAPAKAGA 115
Query: 409 IAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISR 510
IAP V +P NTG+GPEKTSFFQAL IPTKI+R
Sbjct: 116 IAPCDVKLPPQNTGMGPEKTSFFQALQIPTKIAR 149
Score = 100 bits (240), Expect = 1e-21
Identities = 41/64 (64%), Positives = 56/64 (87%)
Frame = +2
Query: 65 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTM 244
M RED++TWK+NYF K+++L +EYPKC +VG DNVGS+QMQ+IR ++RG + +LMGKNTM
Sbjct: 1 MVREDRSTWKANYFTKLVELFEEYPKCLLVGVDNVGSKQMQEIRQAMRGHAEILMGKNTM 60
Query: 245 MRKA 256
+RKA
Sbjct: 61 IRKA 64
Score = 85.0 bits (201), Expect = 5e-17
Identities = 37/53 (69%), Positives = 46/53 (86%)
Frame = +3
Query: 492 PYQNFKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSG 650
P + +GTIEI+NDVH++K GDKVGASE+ LLNML ++PFSYGLVV+QVYD G
Sbjct: 144 PTKIARGTIEILNDVHLIKEGDKVGASESALLNMLGVTPFSYGLVVRQVYDDG 196
Score = 40.3 bits (90), Expect = 0.001
Identities = 16/33 (48%), Positives = 27/33 (81%)
Frame = +2
Query: 653 IFAPEILDIKPEDLRAKFQAGVANVAALSLALD 751
++ PE+LD+ E+LR +F +GV NVA++SLA++
Sbjct: 198 LYTPEVLDMTTEELRKRFLSGVRNVASVSLAVN 230
>Z82286-2|CAB05306.1| 397|Caenorhabditis elegans Hypothetical
protein W02A2.3 protein.
Length = 397
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Frame = +2
Query: 257 SKTTWTTIQPSRNCCHTSRATLASCSPAET-SLRSVTNCWRTKSRLQLVPVPLPHCQSSF 433
S+T + QP+ N R C+P ++S W T S+ +P P P+ +
Sbjct: 286 SRTHYLQCQPAPNNLFCGRWQRMPCAPGTVFDVQSQVCVWDTNSQPGTLPTPAPYVSTQA 345
Query: 434 P 436
P
Sbjct: 346 P 346
>Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical protein
F15D3.1a protein.
Length = 3674
Score = 29.1 bits (62), Expect = 3.6
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = -1
Query: 405 TGTSWSLDFVLQQFVTDLNEVSAGEHEANVALDV--WQQFLEGWIVVQVVFDALRI 244
TG+S LD V Q + + E +A++ +D+ WQ E W +Q + D +R+
Sbjct: 2465 TGSSGVLDPVAVQLTHTRHWLHDVERDASITVDLAQWQPARELWQSIQGIIDEIRL 2520
>Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical protein
F15D3.1a protein.
Length = 3674
Score = 29.1 bits (62), Expect = 3.6
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = -1
Query: 405 TGTSWSLDFVLQQFVTDLNEVSAGEHEANVALDV--WQQFLEGWIVVQVVFDALRI 244
TG+S LD V Q + + E +A++ +D+ WQ E W +Q + D +R+
Sbjct: 2465 TGSSGVLDPVAVQLTHTRHWLHDVERDASITVDLAQWQPARELWQSIQGIIDEIRL 2520
>AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein
protein.
Length = 3674
Score = 29.1 bits (62), Expect = 3.6
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = -1
Query: 405 TGTSWSLDFVLQQFVTDLNEVSAGEHEANVALDV--WQQFLEGWIVVQVVFDALRI 244
TG+S LD V Q + + E +A++ +D+ WQ E W +Q + D +R+
Sbjct: 2465 TGSSGVLDPVAVQLTHTRHWLHDVERDASITVDLAQWQPARELWQSIQGIIDEIRL 2520
>Z71177-9|CAA94868.2| 425|Caenorhabditis elegans Hypothetical
protein AC3.4 protein.
Length = 425
Score = 28.7 bits (61), Expect = 4.7
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Frame = +2
Query: 233 KNTMMRKASKTTWTTIQPSRNCCHTSRATLASCSPAETSLRSVTNCWR--TKSRLQLVPV 406
+ T +AS+ Q +N C ++ + S + S ++ ++C+ T + +Q P
Sbjct: 74 QQTYQIQASQCAPACQQSCQNQCQSAPSVSQCQSTCQQSCQT-SSCYTPTTPAPVQCQPS 132
Query: 407 PLPHCQSSFPPTTPASVQRKP 469
+P C+ S TPA+VQ P
Sbjct: 133 CMPACEQSCVVQTPAAVQCVP 153
>U41264-4|AAA82424.1| 220|Caenorhabditis elegans Hypothetical
protein F10E7.5 protein.
Length = 220
Score = 28.7 bits (61), Expect = 4.7
Identities = 18/70 (25%), Positives = 35/70 (50%)
Frame = +2
Query: 38 RSPYATLSRMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSS 217
R +L+++ ++ K T K+N ++ +D+Y FI N+ S + IR + +S
Sbjct: 6 RDKNVSLTKVKKKTKDT-KNNLVNEVRASVDQYKNLFIFTIANMRSTRFIAIRQKYKENS 64
Query: 218 IVLMGKNTMM 247
GKN ++
Sbjct: 65 RFFFGKNNVI 74
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = +1
Query: 286 LEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIP 435
L K +KG G +FT EV + E + AR G +A +VV+P
Sbjct: 90 LHKASAILKGQCGLMFTNMSKKEVEAEFSEASEEDYARVGDVATETVVLP 139
>Z29561-4|CAD91697.1| 498|Caenorhabditis elegans Hypothetical
protein R10E12.1d protein.
Length = 498
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Frame = +2
Query: 401 PVPLPHCQSSFPPTTPASVQRKPLSSKLFPSLPKFQ---GYY 517
P+P P Q S T A Q P + P + +FQ GYY
Sbjct: 386 PIPPPRTQQSMQATPGAPPQYNPYQQQQQPQMQQFQQHPGYY 427
>Z29561-2|CAD54152.1| 882|Caenorhabditis elegans Hypothetical
protein R10E12.1b protein.
Length = 882
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Frame = +2
Query: 401 PVPLPHCQSSFPPTTPASVQRKPLSSKLFPSLPKFQ---GYY 517
P+P P Q S T A Q P + P + +FQ GYY
Sbjct: 770 PIPPPRTQQSMQATPGAPPQYNPYQQQQQPQMQQFQQHPGYY 811
>Z29561-1|CAA82667.2| 861|Caenorhabditis elegans Hypothetical
protein R10E12.1a protein.
Length = 861
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Frame = +2
Query: 401 PVPLPHCQSSFPPTTPASVQRKPLSSKLFPSLPKFQ---GYY 517
P+P P Q S T A Q P + P + +FQ GYY
Sbjct: 749 PIPPPRTQQSMQATPGAPPQYNPYQQQQQPQMQQFQQHPGYY 790
>U73679-1|AAC67305.1| 861|Caenorhabditis elegans YNK1-a protein.
Length = 861
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Frame = +2
Query: 401 PVPLPHCQSSFPPTTPASVQRKPLSSKLFPSLPKFQ---GYY 517
P+P P Q S T A Q P + P + +FQ GYY
Sbjct: 749 PIPPPRTQQSMQATPGAPPQYNPYQQQQQPQMQQFQQHPGYY 790
>U53154-2|AAC25856.1| 358|Caenorhabditis elegans Hypothetical
protein C33G8.12 protein.
Length = 358
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/38 (39%), Positives = 25/38 (65%)
Frame = +2
Query: 20 LVLKFHRSPYATLSRMGREDKATWKSNYFVKIIQLLDE 133
L+ K S ++ +SR+ +EDK + SN+++K QLL E
Sbjct: 156 LLWKLGESIFSDVSRLSKEDKNSMISNFYIK-WQLLME 192
>AC006770-2|AAF60593.1| 1145|Caenorhabditis elegans Hypothetical
protein Y46B2A.3 protein.
Length = 1145
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -2
Query: 428 TTDNGAMAPGRAGAWTLFSNSLSRTSTRSPRVNTKPT 318
TT P AG WT+ +N ++R TR P +PT
Sbjct: 192 TTRGFTQRPTAAG-WTIRANGITRGQTRVPGTTREPT 227
>Z71177-2|CAA94867.1| 425|Caenorhabditis elegans Hypothetical
protein AC3.3 protein.
Length = 425
Score = 27.9 bits (59), Expect = 8.2
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Frame = +2
Query: 233 KNTMMRKASKTTWTTIQPSRNCCHTSRATLASCSPAETSLRSVTNCWR--TKSRLQLVPV 406
+ T +AS+ Q +N C ++ + S + S ++ ++C+ T + +Q P
Sbjct: 74 QQTYQIQASQCAPACQQSCQNQCQSAPSVSQCQSTCQQSCQT-SSCYTPTTPAPVQCQPS 132
Query: 407 PLPHCQSSFPPTTPASVQRKP 469
+P C+ S TPA VQ P
Sbjct: 133 CMPACEQSCVVQTPAPVQCVP 153
>AF098986-3|AAC67424.1| 832|Caenorhabditis elegans Hypothetical
protein C36C9.1 protein.
Length = 832
Score = 27.9 bits (59), Expect = 8.2
Identities = 20/75 (26%), Positives = 33/75 (44%)
Frame = +2
Query: 251 KASKTTWTTIQPSRNCCHTSRATLASCSPAETSLRSVTNCWRTKSRLQLVPVPLPHCQSS 430
K+S T + N C T + + +C + + W +++ Q P PLP C+S+
Sbjct: 586 KSSHCTGNPVSIDCNGCPTPKRSGINCDNRMAEVNNQAGRWSSEATSQ--PAPLP-CKSA 642
Query: 431 FPPTTPASVQRKPLS 475
PT +S P S
Sbjct: 643 -NPTEDSSQDAPPTS 656
>AC006761-8|AAF60552.2| 524|Caenorhabditis elegans Hypothetical
protein Y41G9A.6 protein.
Length = 524
Score = 27.9 bits (59), Expect = 8.2
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Frame = +2
Query: 317 TLASCSPAETSLRSVTNCWRTKSRLQL-VPVPL-PHCQSSFPPTTPASVQRKPLSSKLFP 490
T+ S P ++ T+S + L + VP P + FPP TP + P ++ L
Sbjct: 451 TVVSSEPNHIDFSAINQLSHTQSPVNLQIRVPQQPLGAAGFPPVTPGLFENNPQNTDLAD 510
Query: 491 SLPKF 505
L F
Sbjct: 511 LLQNF 515
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,499,753
Number of Sequences: 27780
Number of extensions: 446245
Number of successful extensions: 1499
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1492
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -