Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20714
(756 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)... 100 2e-21
At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)... 100 2e-21
At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A) 98 5e-21
At3g50610.1 68416.m05534 hypothetical protein 33 0.15
At1g58220.1 68414.m06612 myb family transcription factor contain... 33 0.27
At3g18080.1 68416.m02299 glycosyl hydrolase family 1 protein con... 31 0.83
At1g51860.1 68414.m05846 leucine-rich repeat protein kinase, put... 29 2.5
At5g13260.1 68418.m01523 expressed protein 28 5.8
At5g01730.1 68418.m00091 expressed protein 28 5.8
At3g09000.1 68416.m01053 proline-rich family protein 28 5.8
At5g04470.1 68418.m00445 expressed protein 28 7.7
At4g34040.1 68417.m04830 zinc finger (C3HC4-type RING finger) fa... 28 7.7
At2g42840.2 68415.m05305 protodermal factor 1 (PDF1) identical t... 28 7.7
At2g42840.1 68415.m05304 protodermal factor 1 (PDF1) identical t... 28 7.7
At2g41660.1 68415.m05147 expressed protein contains Pfam profile... 28 7.7
>At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)
similar to 60S acidic ribosomal protein P0 GI:2088654
[Arabidopsis thaliana]
Length = 323
Score = 99.5 bits (237), Expect = 2e-21
Identities = 48/96 (50%), Positives = 68/96 (70%), Gaps = 2/96 (2%)
Frame = +1
Query: 229 GKKHYDAQSIKDHLDN--NPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARP 402
GK +S++ H +N N A+ LLP ++GNVG +FT+GDL EV +++ + KV APAR
Sbjct: 56 GKNTMMKRSVRIHSENSGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARV 115
Query: 403 GAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISR 510
G +AP+ VV+ NTGL P +TSFFQ L+IPTKI++
Sbjct: 116 GLVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTKINK 151
Score = 73.3 bits (172), Expect = 2e-13
Identities = 35/64 (54%), Positives = 45/64 (70%)
Frame = +2
Query: 65 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTM 244
M + KA K Y K+ QL+DEY + +V ADNVGS Q+Q IR LRG S+VLMGKNTM
Sbjct: 1 MVKATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTM 60
Query: 245 MRKA 256
M+++
Sbjct: 61 MKRS 64
Score = 69.7 bits (163), Expect = 2e-12
Identities = 32/48 (66%), Positives = 38/48 (79%)
Frame = +3
Query: 507 KGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSG 650
KGT+EII V ++K GDKVG+SEA LL L I PFSYGLVV+ VYD+G
Sbjct: 151 KGTVEIITPVELIKQGDKVGSSEAALLAKLGIRPFSYGLVVQSVYDNG 198
Score = 34.7 bits (76), Expect = 0.067
Identities = 13/33 (39%), Positives = 25/33 (75%)
Frame = +2
Query: 650 NIFAPEILDIKPEDLRAKFQAGVANVAALSLAL 748
++F+PE+LD+ + L KF +G++ V +L+LA+
Sbjct: 199 SVFSPEVLDLTEDQLVEKFASGISMVTSLALAV 231
>At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)
similar to putative 60S acidic ribosomal protein P0
GB:P50346 [Glycine max]
Length = 320
Score = 99.5 bits (237), Expect = 2e-21
Identities = 48/96 (50%), Positives = 68/96 (70%), Gaps = 2/96 (2%)
Frame = +1
Query: 229 GKKHYDAQSIKDHLDN--NPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARP 402
GK +S++ H +N N A+ LLP ++GNVG +FT+GDL EV +++ + KV APAR
Sbjct: 56 GKNTMMKRSVRIHSENTGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARV 115
Query: 403 GAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISR 510
G +AP+ VV+ NTGL P +TSFFQ L+IPTKI++
Sbjct: 116 GLVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTKINK 151
Score = 73.3 bits (172), Expect = 2e-13
Identities = 35/64 (54%), Positives = 45/64 (70%)
Frame = +2
Query: 65 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTM 244
M + KA K Y K+ QL+DEY + +V ADNVGS Q+Q IR LRG S+VLMGKNTM
Sbjct: 1 MVKATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTM 60
Query: 245 MRKA 256
M+++
Sbjct: 61 MKRS 64
Score = 69.7 bits (163), Expect = 2e-12
Identities = 32/48 (66%), Positives = 38/48 (79%)
Frame = +3
Query: 507 KGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSG 650
KGT+EII V ++K GDKVG+SEA LL L I PFSYGLVV+ VYD+G
Sbjct: 151 KGTVEIITPVELIKQGDKVGSSEAALLAKLGIRPFSYGLVVQSVYDNG 198
Score = 34.7 bits (76), Expect = 0.067
Identities = 13/33 (39%), Positives = 25/33 (75%)
Frame = +2
Query: 650 NIFAPEILDIKPEDLRAKFQAGVANVAALSLAL 748
++F+PE+LD+ + L KF +G++ V +L+LA+
Sbjct: 199 SVFSPEVLDLTEDQLVEKFASGISMVTSLALAV 231
>At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A)
Length = 317
Score = 98.3 bits (234), Expect = 5e-21
Identities = 48/96 (50%), Positives = 66/96 (68%), Gaps = 2/96 (2%)
Frame = +1
Query: 229 GKKHYDAQSIKDHLDN--NPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARP 402
GK +S++ H D N A LLP ++GNVG +FT+GDL EV +++ + KV APAR
Sbjct: 57 GKNTMMKRSVRIHADKTGNQAFLSLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARV 116
Query: 403 GAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISR 510
G +AP+ VV+ NTGL P +TSFFQ L+IPTKI++
Sbjct: 117 GLVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTKINK 152
Score = 70.1 bits (164), Expect = 1e-12
Identities = 34/59 (57%), Positives = 43/59 (72%)
Frame = +2
Query: 80 KATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKA 256
KA K Y K+ QLL+EY + +V ADNVGS Q+Q IR LRG S+VLMGKNTMM+++
Sbjct: 7 KAEKKIVYDSKLCQLLNEYSQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRS 65
Score = 69.7 bits (163), Expect = 2e-12
Identities = 32/48 (66%), Positives = 38/48 (79%)
Frame = +3
Query: 507 KGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSG 650
KGT+EII V ++K GDKVG+SEA LL L I PFSYGLVV+ VYD+G
Sbjct: 152 KGTVEIITPVELIKKGDKVGSSEAALLAKLGIRPFSYGLVVESVYDNG 199
Score = 37.9 bits (84), Expect = 0.007
Identities = 16/33 (48%), Positives = 25/33 (75%)
Frame = +2
Query: 650 NIFAPEILDIKPEDLRAKFQAGVANVAALSLAL 748
++F PE+L++ +DL KF AGV+ + ALSLA+
Sbjct: 200 SVFNPEVLNLTEDDLVEKFAAGVSMITALSLAI 232
>At3g50610.1 68416.m05534 hypothetical protein
Length = 229
Score = 33.5 bits (73), Expect = 0.15
Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Frame = +1
Query: 220 RAHGKKHYDAQSIKDHLDNNPALEKLLPHIKGNVGFVFTRGDLVEVRD-KLLENKVQAPA 396
+ + + H+ A D + +P + H KGNV + D KLL+ VQ
Sbjct: 17 KTNDQDHFKAGFTDDFVPTSPGNSPGVGHKKGNVNVEGFQDDFKPTEGRKLLKTNVQDHF 76
Query: 397 RPGAIAPLSVVIPAHNTGLGPEK 465
+ G+ + P H+ G+G +K
Sbjct: 77 KTGSTDDFAPTSPGHSPGVGHKK 99
>At1g58220.1 68414.m06612 myb family transcription factor contains
Pfam profile: PF00249: Myb-like DNA-binding domain
Length = 834
Score = 32.7 bits (71), Expect = 0.27
Identities = 33/102 (32%), Positives = 45/102 (44%), Gaps = 8/102 (7%)
Frame = -2
Query: 554 TGLQDVYIVDDFNSTLEILVGMERAWKKEVFSGPRPVLWAGMTTDNGAMAPGRAGAWTLF 375
TGLQ N L + VG R K++ G P+L +G T GA A G + TL
Sbjct: 255 TGLQRTEAQMAANRALSLAVG-NRLPSKKLAVGMTPMLSSG--TIKGAQANGASSGSTLQ 311
Query: 374 SN--------SLSRTSTRSPRVNTKPTLPLMCGNSFSRAGLL 273
+LSR +T P ++ + GNS SRA L+
Sbjct: 312 GQQQPQPQIQALSRATTSVPVAKSRVPVKKTTGNSTSRADLM 353
>At3g18080.1 68416.m02299 glycosyl hydrolase family 1 protein
contains Pfam PF00232 : Glycosyl hydrolase family 1
domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
similar to beta-glucosidase BGQ60 precursor GB:A57512
[Hordeum vulgare]; similar to beta-mannosidase enzyme
(GI:17226270) [Lycopersicon esculentum]
Length = 512
Score = 31.1 bits (67), Expect = 0.83
Identities = 32/114 (28%), Positives = 44/114 (38%), Gaps = 2/114 (1%)
Frame = -2
Query: 662 VQKYSRIIYLLNNKTI*EWRDVQHVEKGGFRSSNLVTGLQDVYIVDDFNSTLEILVGM-- 489
V Y+R+I + K I + ++ H + N GL +V DF E
Sbjct: 136 VAYYNRLIDYMVQKGITPYANLYHYDLP-LALENKYKGLLGRQVVKDFADYAEFCYKTFG 194
Query: 488 ERAWKKEVFSGPRPVLWAGMTTDNGAMAPGRAGAWTLFSNSLSRTSTRSPRVNT 327
+R F+ PR V A + DNG APGR F N S P + T
Sbjct: 195 DRVKNWMTFNEPRVV--AALGYDNGIFAPGRCS--KAFGNCTEGNSATEPYIVT 244
>At1g51860.1 68414.m05846 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
contains leucine rich repeat (LRR) domains,
Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 890
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = +1
Query: 274 NNPALEKLL--PHIKGNVGFVFTRGDLVEVRDKLL 372
N P ++K PHI VGF+ T+GD+ + D L
Sbjct: 781 NQPVIDKTRERPHINDWVGFMLTKGDIKSIVDPKL 815
>At5g13260.1 68418.m01523 expressed protein
Length = 537
Score = 28.3 bits (60), Expect = 5.8
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -2
Query: 224 ARYWSHVARYGSAASVASPRYRH 156
ARYW +RYG + +A+ +Y +
Sbjct: 330 ARYWGLASRYGICSDIATSKYEY 352
>At5g01730.1 68418.m00091 expressed protein
Length = 1192
Score = 28.3 bits (60), Expect = 5.8
Identities = 19/58 (32%), Positives = 30/58 (51%)
Frame = +1
Query: 445 TGLGPEKTSFFQALSIPTKISRVLLKSSTMYTS*SPVTRLELLKPPFSTC*TSLHSHM 618
TG +TS + S PT+ V ++SS + S +T +E L P+ TSL+ H+
Sbjct: 822 TGSANSRTSSDE--SPPTQNGSVGVQSSPLDVFPSSITEIEALHAPYQEIFTSLNDHI 877
>At3g09000.1 68416.m01053 proline-rich family protein
Length = 541
Score = 28.3 bits (60), Expect = 5.8
Identities = 33/112 (29%), Positives = 48/112 (42%), Gaps = 11/112 (9%)
Frame = +2
Query: 194 RISLRGSSIVLMGKNTMMRKASKTTWTTIQP-------SRNCCHTSRATLASCSPAETSL 352
R S GSS T R+++ T +T +P SR+ TSRATL + ++
Sbjct: 146 RPSSSGSSRSTSRPATPTRRSTTPTTSTSRPVTTRASNSRSSTPTSRATLTAARATTSTA 205
Query: 353 RSVTNCWRTKSRLQLVPV---PLPHCQSSFPPTT-PASVQRKPLSSKLFPSL 496
T + S P P P SS P + PA+ R+P S+ PS+
Sbjct: 206 APRTTTTSSGSARSATPTRSNPRPSSASSKKPVSRPATPTRRP-STPTGPSI 256
>At5g04470.1 68418.m00445 expressed protein
Length = 127
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 407 PLPHCQSSFPPTTPASVQRKPLSSKLFPSLPKFQ 508
P P Q PP+TP+S+ + KL SL K++
Sbjct: 51 PPPPPQKPRPPSTPSSLGIRSCKRKLMTSLSKYE 84
>At4g34040.1 68417.m04830 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 666
Score = 27.9 bits (59), Expect = 7.7
Identities = 17/38 (44%), Positives = 19/38 (50%)
Frame = -2
Query: 425 TDNGAMAPGRAGAWTLFSNSLSRTSTRSPRVNTKPTLP 312
T+NGA G A S SLS S SP VN + LP
Sbjct: 205 TENGAWNEGLAQYDASSSLSLSMPSQNSPNVNNQSGLP 242
>At2g42840.2 68415.m05305 protodermal factor 1 (PDF1) identical to
protodermal factor 1 [Arabidopsis thaliana]
gi|4929130|gb|AAD33869
Length = 306
Score = 27.9 bits (59), Expect = 7.7
Identities = 18/62 (29%), Positives = 23/62 (37%), Gaps = 1/62 (1%)
Frame = +2
Query: 335 PAETSLRSVTNCWRTKSRLQLVPVP-LPHCQSSFPPTTPASVQRKPLSSKLFPSLPKFQG 511
P+ T S + T P P P C PP+ P++ S PS P G
Sbjct: 76 PSHTPTPSTPSHTPTPHTPSHTPTPHTPPCNCGSPPSHPSTPSHPSTPSHPTPSHPPSGG 135
Query: 512 YY 517
YY
Sbjct: 136 YY 137
>At2g42840.1 68415.m05304 protodermal factor 1 (PDF1) identical to
protodermal factor 1 [Arabidopsis thaliana]
gi|4929130|gb|AAD33869
Length = 306
Score = 27.9 bits (59), Expect = 7.7
Identities = 18/62 (29%), Positives = 23/62 (37%), Gaps = 1/62 (1%)
Frame = +2
Query: 335 PAETSLRSVTNCWRTKSRLQLVPVP-LPHCQSSFPPTTPASVQRKPLSSKLFPSLPKFQG 511
P+ T S + T P P P C PP+ P++ S PS P G
Sbjct: 76 PSHTPTPSTPSHTPTPHTPSHTPTPHTPPCNCGSPPSHPSTPSHPSTPSHPTPSHPPSGG 135
Query: 512 YY 517
YY
Sbjct: 136 YY 137
>At2g41660.1 68415.m05147 expressed protein contains Pfam profile
PF04759: Protein of unknown function, DUF617
Length = 297
Score = 27.9 bits (59), Expect = 7.7
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Frame = +2
Query: 434 PPTTPA--SVQRKPLSSKLFPSLPKFQGYY*NHQRCTHL 544
P T+PA S R P SS L PS+P+ + + +RC+++
Sbjct: 22 PVTSPARSSHVRSPSSSALIPSIPEHELFLVPCRRCSYV 60
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,790,111
Number of Sequences: 28952
Number of extensions: 432933
Number of successful extensions: 1340
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1340
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1682736544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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