Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20713
(722 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8342| Best HMM Match : FKBP_C (HMM E-Value=0) 109 2e-24
SB_19729| Best HMM Match : No HMM Matches (HMM E-Value=.) 80 2e-15
SB_34766| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.033
SB_10928| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.31
SB_25956| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.72
SB_45885| Best HMM Match : efhand (HMM E-Value=5.9e-05) 31 1.2
SB_25425| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_6736| Best HMM Match : efhand (HMM E-Value=2.6e-21) 29 2.9
SB_13421| Best HMM Match : Harpin (HMM E-Value=0.62) 29 3.8
SB_58660| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.0
SB_53572| Best HMM Match : efhand (HMM E-Value=0.0053) 29 5.0
SB_48888| Best HMM Match : rve (HMM E-Value=6.4e-33) 29 5.0
SB_21444| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.0
SB_8223| Best HMM Match : RVT_1 (HMM E-Value=4e-27) 28 6.7
SB_39530| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
SB_38622| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
SB_20477| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
SB_16681| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
SB_51467| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
SB_25949| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
SB_25627| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
SB_20840| Best HMM Match : Rota_NS26 (HMM E-Value=4.2) 28 8.8
>SB_8342| Best HMM Match : FKBP_C (HMM E-Value=0)
Length = 266
Score = 109 bits (263), Expect = 2e-24
Identities = 51/85 (60%), Positives = 60/85 (70%), Gaps = 1/85 (1%)
Frame = +1
Query: 256 DRDQPFTFQIGVGQVIKGWDQGLLDMCVGEKRKLTIPASLGYGERGAGNVIPPHATLHFE 435
DR + F F +G G VI+GW+QGLLDMC+GEKRKLTIP L YGE GAG IPPHATL+ +
Sbjct: 67 DRGKTFDFTLGKGMVIQGWEQGLLDMCIGEKRKLTIPPHLAYGENGAGAAIPPHATLYMD 126
Query: 436 VELINI-GDSPPATNVFKEIDADKD 507
VEL+ I G NVF ID + D
Sbjct: 127 VELVEIQGSKESDPNVFGMIDKNND 151
Score = 64.5 bits (150), Expect = 8e-11
Identities = 35/66 (53%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Frame = +2
Query: 62 MTTLRCVLMLVALAGATFAGPEVT-ELKTEVVSVPEGCTTKSKHGDMLTMHYTGTLDDGH 238
M L +L +VA +G E ELK EVVS PE CT K+ GD L+MHYTG L +G+
Sbjct: 1 MKGLMNLLAIVAFSGLALGAEEPKGELKIEVVSKPEKCTRKTHVGDTLSMHYTGRLANGN 60
Query: 239 KFDSSL 256
KFDSSL
Sbjct: 61 KFDSSL 66
Score = 42.3 bits (95), Expect = 4e-04
Identities = 25/50 (50%), Positives = 33/50 (66%)
Frame = +3
Query: 510 MLSREEVSDYLKKQMVPADGGEVSEDIKQMLESHDKLVEEIFQHEDKDKN 659
+L++EEV +YLK+Q GG S+D SHD +V EIFQ EDKDK+
Sbjct: 153 VLTQEEVKNYLKEQ-----GGMPSDDEA----SHDTIVSEIFQQEDKDKD 193
>SB_19729| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 299
Score = 80.2 bits (189), Expect = 2e-15
Identities = 37/85 (43%), Positives = 57/85 (67%), Gaps = 4/85 (4%)
Frame = +1
Query: 265 QPFTFQIGVGQVIKGWDQGLLDMCVGEKRKLTIPASLGYGERGA----GNVIPPHATLHF 432
QPF F IG G VIKG++QG+ MCVG+KRK+ IP +L YG++G+ GN+ + TL +
Sbjct: 146 QPFEFTIGGGTVIKGFEQGVTGMCVGQKRKIVIPPALAYGKKGSGDVPGNLDLTNTTLTY 205
Query: 433 EVELINIGDSPPATNVFKEIDADKD 507
+EL ++ PP +++F +D + D
Sbjct: 206 NLELFDVRKPPPHSDMFSHMDENGD 230
Score = 54.0 bits (124), Expect = 1e-07
Identities = 26/59 (44%), Positives = 40/59 (67%)
Frame = +3
Query: 513 LSREEVSDYLKKQMVPADGGEVSEDIKQMLESHDKLVEEIFQHEDKDKNGFISHEEFSG 689
LSREEVS Y++KQ A+ ++ H+++V+ +F++ED D++G ISHEEFSG
Sbjct: 233 LSREEVSAYMRKQ---AEAQFAPTYDQRWQHHHERMVDNVFEYEDHDEDGHISHEEFSG 288
Score = 41.1 bits (92), Expect = 9e-04
Identities = 16/40 (40%), Positives = 25/40 (62%)
Frame = +2
Query: 134 ELKTEVVSVPEGCTTKSKHGDMLTMHYTGTLDDGHKFDSS 253
+++ E VP C K+K GD + +HYTG + DG FD++
Sbjct: 99 KIEVEETFVPSDCENKTKVGDHVVVHYTGWMQDGSLFDTT 138
>SB_34766| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 740
Score = 35.9 bits (79), Expect = 0.033
Identities = 15/29 (51%), Positives = 21/29 (72%)
Frame = +3
Query: 612 DKLVEEIFQHEDKDKNGFISHEEFSGLST 698
D++VE +F + D DKNG IS+EEF +T
Sbjct: 696 DEMVEHVFAYADADKNGEISYEEFKVWAT 724
>SB_10928| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 987
Score = 32.7 bits (71), Expect = 0.31
Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Frame = +3
Query: 561 ADGGEVSEDIKQMLESH-DKLVEEIFQHEDKDKNGFISHEEFSGLSTTNF 707
A GG D ++++E H +VE +F+ D +K+G IS +EF ++ TNF
Sbjct: 263 ASGGTAVPD-RRVVERHVSAMVEAVFRVYDTNKDGTISSKEFDAIA-TNF 310
>SB_25956| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1146
Score = 31.5 bits (68), Expect = 0.72
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +3
Query: 585 DIKQMLESHDKLVEEIFQHEDKDKNGFISHEEF 683
D K+ E ++ E + DKDK+GF+S +EF
Sbjct: 992 DPKERDEEISRMREHVMNEIDKDKDGFVSQDEF 1024
>SB_45885| Best HMM Match : efhand (HMM E-Value=5.9e-05)
Length = 611
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/58 (25%), Positives = 32/58 (55%)
Frame = +3
Query: 510 MLSREEVSDYLKKQMVPADGGEVSEDIKQMLESHDKLVEEIFQHEDKDKNGFISHEEF 683
+LS E ++ + M G +++ +++E+ K+V+E F+ K+G +S +EF
Sbjct: 206 LLSSLESAEKILDNMEEPSSGCTADNTDRLIETVTKIVDEAFKKSHVSKSGKLSAKEF 263
>SB_25425| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 766
Score = 29.5 bits (63), Expect = 2.9
Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 4/84 (4%)
Frame = +2
Query: 152 VSVPEGCTTKSKHGDMLTMHYTGTLDDGHKFDSSLIAIN-LLRSKL---ALGK*SRDGTR 319
+S+ EGC + + + TLD+ H+ ++ + L R + + K D T+
Sbjct: 367 LSLHEGCVMRGNRVVIPSALRARTLDELHESHLGIVKMKELARDHIWWPGIDKDIEDLTK 426
Query: 320 ACLTCALVRNVN*LFPHPWATESA 391
+C C RN HPWA A
Sbjct: 427 SCGPCNTTRNAPPSQYHPWAYPQA 450
>SB_6736| Best HMM Match : efhand (HMM E-Value=2.6e-21)
Length = 198
Score = 29.5 bits (63), Expect = 2.9
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +3
Query: 621 VEEIFQHEDKDKNGFISHEEFS 686
+E+IFQ D+D +G+I H E S
Sbjct: 70 LEKIFQEIDEDNSGYIDHNEIS 91
>SB_13421| Best HMM Match : Harpin (HMM E-Value=0.62)
Length = 375
Score = 29.1 bits (62), Expect = 3.8
Identities = 17/53 (32%), Positives = 24/53 (45%)
Frame = -1
Query: 377 PKDAGIVSLRFSPTHMSSKPWSHPLITCPTPIWNVKG*SRSNSSRTCVRRLAC 219
PK G S H SS W HP ++C + I V S S S + +++C
Sbjct: 257 PKSHGAASPSLMGQHFSSLMWQHPQVSCGS-ISQVSCGSISKVSCGSISKVSC 308
>SB_58660| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 960
Score = 28.7 bits (61), Expect = 5.0
Identities = 15/55 (27%), Positives = 23/55 (41%)
Frame = +3
Query: 516 SREEVSDYLKKQMVPADGGEVSEDIKQMLESHDKLVEEIFQHEDKDKNGFISHEE 680
SRE+ ++ D ++ + L F DKDK+GFI+H E
Sbjct: 279 SREDAEVLHNREGPEGDRSREDQESVRSPNRRRTLFRHYFTKNDKDKDGFINHRE 333
>SB_53572| Best HMM Match : efhand (HMM E-Value=0.0053)
Length = 263
Score = 28.7 bits (61), Expect = 5.0
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +3
Query: 519 REEVSDYLKKQMVPADGGEVSEDIKQMLESHD-KLVEEIFQHEDKDKNGFISHEEFS 686
+ + D K M A E ++ +ML + + + +IF DKD++G+I+ E S
Sbjct: 187 KAQYKDIHKSDMPRAQVEEAQNELVRMLSPREIQSLRDIFHAFDKDEDGYINSYEVS 243
>SB_48888| Best HMM Match : rve (HMM E-Value=6.4e-33)
Length = 566
Score = 28.7 bits (61), Expect = 5.0
Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 4/83 (4%)
Frame = +2
Query: 155 SVPEGCTTKSKHGDMLTMHYTGTLDDGHKFDSSLIAIN-LLRSKL---ALGK*SRDGTRA 322
++P+GC + + + TLD+ H+ ++ + L R + + K D ++
Sbjct: 248 TIPDGCVMRGHRVVIPSALRARTLDELHESHLGIVKMKELARGHIWWPGIDKDIEDLAKS 307
Query: 323 CLTCALVRNVN*LFPHPWATESA 391
C C RN HPWA A
Sbjct: 308 CGPCNTTRNAPPSQYHPWAYPQA 330
>SB_21444| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 28.7 bits (61), Expect = 5.0
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +3
Query: 594 QMLESHDKLVEEIFQHEDKDKNGFISHEEF 683
QM H ++++ IF+ D+D G + +EEF
Sbjct: 54 QMNNEHLEVLQRIFEEADEDGGGGLDYEEF 83
>SB_8223| Best HMM Match : RVT_1 (HMM E-Value=4e-27)
Length = 1307
Score = 28.3 bits (60), Expect = 6.7
Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 4/84 (4%)
Frame = +2
Query: 152 VSVPEGCTTKSKHGDMLTMHYTGTLDDGHKFDSSLIAIN-LLRSKL---ALGK*SRDGTR 319
+S+ EGC + + + T TLD+ H+ ++ + L R + + K D +
Sbjct: 745 LSLHEGCIIRGHRVVIPSALRTRTLDELHEGHLGIVKMKELTRGHIWWPGIDKDIEDLAK 804
Query: 320 ACLTCALVRNVN*LFPHPWATESA 391
+C C RN HPWA A
Sbjct: 805 SCGQCNATRNAPPSQYHPWAYPQA 828
>SB_39530| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1323
Score = 27.9 bits (59), Expect = 8.8
Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Frame = -3
Query: 489 FLEH-VCGRWRVTDVDQLHFEMQCSVGRNHVAGSALS--VAQGCGNSQFTFLTNAHVKQA 319
F++H V R V+ ++ ++ E+ + + +S V QG Q L NA+ +
Sbjct: 444 FIKHSVLDRLHVSGLE-VNLELSTMLATQTINSQKISGLVVQGVNEKQDIHLPNAYTRDC 502
Query: 318 LVPSLDHLPNANLERK 271
+ DH+P R+
Sbjct: 503 IPAQRDHIPTPESARR 518
>SB_38622| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3824
Score = 27.9 bits (59), Expect = 8.8
Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +1
Query: 388 RGAGNVIPPHAT-LHFEVELINIGDSPPATNVFKEIDADKDT 510
RG + IPP +T +V + ++ D+PP + E++ +DT
Sbjct: 2324 RGTDSGIPPKSTNCQVKVVVTDLNDNPPLFDPLSEVNIREDT 2365
>SB_20477| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 50
Score = 27.9 bits (59), Expect = 8.8
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +3
Query: 639 HEDKDKNGFISHEEF 683
H DKDK G++ H+EF
Sbjct: 2 HFDKDKTGYLDHQEF 16
>SB_16681| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 352
Score = 27.9 bits (59), Expect = 8.8
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +2
Query: 122 PEVTELKTEVVSVPEGCTTKSKHGDMLTMHYTGTLDDGH 238
P T K +++ P+G TK +HG++ T+ + DG+
Sbjct: 51 PTHTTFKPDLIETPKG--TKQRHGNVKTVEFKVVEQDGN 87
>SB_51467| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 465
Score = 27.9 bits (59), Expect = 8.8
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = -3
Query: 528 LLRGRACVLIGVDFLEHVCGRWRVTDVDQLHFEMQCSVGRNHVAGSAL 385
L+ + + + V +E V R + DV QLH + + S+GR V+ L
Sbjct: 177 LIERESVIAVRVHLVECVWFRLPILDVQQLHVKYERSLGRELVSNLLL 224
>SB_25949| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 501
Score = 27.9 bits (59), Expect = 8.8
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = +3
Query: 516 SREEVSDYLKKQMVPADGGEVSEDIKQMLESHDKLVEEIFQHEDKDKNGFISHEE 680
S +++ D DG + +DI +SHD + + H+D D +G SH++
Sbjct: 273 SHDDIDDDTDNHDDTDDGTDSHDDIDDGTDSHDDIDDGTDSHDDID-DGTDSHDD 326
>SB_25627| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 50
Score = 27.9 bits (59), Expect = 8.8
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +3
Query: 639 HEDKDKNGFISHEEF 683
H DKDK G++ H+EF
Sbjct: 2 HFDKDKTGYLDHQEF 16
>SB_20840| Best HMM Match : Rota_NS26 (HMM E-Value=4.2)
Length = 466
Score = 27.9 bits (59), Expect = 8.8
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +2
Query: 122 PEVTELKTEVVSVPEGCTTKSKHGDMLTMHYTGTLDDGH 238
P T K +++ P+G TK +HG++ T+ + DG+
Sbjct: 165 PTHTTFKPDLIETPKG--TKQRHGNVKTVEFKVVEQDGN 201
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,552,728
Number of Sequences: 59808
Number of extensions: 483788
Number of successful extensions: 1324
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1317
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -