Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20712
(528 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45540| Best HMM Match : HSP70 (HMM E-Value=0) 162 1e-40
SB_8490| Best HMM Match : HSP70 (HMM E-Value=0) 160 7e-40
SB_56180| Best HMM Match : No HMM Matches (HMM E-Value=.) 154 5e-38
SB_45647| Best HMM Match : HSP70 (HMM E-Value=0) 139 1e-33
SB_51590| Best HMM Match : HSP70 (HMM E-Value=4.4e-36) 96 2e-20
SB_57217| Best HMM Match : Helicase_C (HMM E-Value=0.049) 73 1e-13
SB_38725| Best HMM Match : No HMM Matches (HMM E-Value=.) 70 1e-12
SB_15336| Best HMM Match : No HMM Matches (HMM E-Value=.) 69 2e-12
SB_47391| Best HMM Match : HSP70 (HMM E-Value=2.7e-07) 61 6e-10
SB_31398| Best HMM Match : No HMM Matches (HMM E-Value=.) 55 4e-08
SB_29289| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.59
SB_50183| Best HMM Match : zf-C2H2 (HMM E-Value=0) 30 1.4
SB_41892| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_28120| Best HMM Match : ScdA_N (HMM E-Value=6.5) 29 1.8
SB_10754| Best HMM Match : C2 (HMM E-Value=5.1e-40) 29 2.4
SB_27085| Best HMM Match : Filamin (HMM E-Value=1.5) 29 3.1
SB_38784| Best HMM Match : Apo-VLDL-II (HMM E-Value=8.3) 28 4.1
SB_55740| Best HMM Match : C1_1 (HMM E-Value=3.6) 28 4.1
SB_41920| Best HMM Match : Filamin (HMM E-Value=0.00015) 28 4.1
SB_32584| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5
SB_27251| Best HMM Match : Extensin_2 (HMM E-Value=0.077) 28 5.5
SB_59101| Best HMM Match : PT (HMM E-Value=0.026) 28 5.5
SB_57953| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.2
SB_49281| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.2
SB_30476| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.2
SB_31943| Best HMM Match : ResIII (HMM E-Value=1.6) 27 7.2
SB_29335| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.2
SB_6887| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
>SB_45540| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 1097
Score = 162 bits (394), Expect = 1e-40
Identities = 75/84 (89%), Positives = 82/84 (97%)
Frame = +1
Query: 256 KSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLATNKRALRRLRTACERAKRTLSSSTQ 435
KSTAGDTHLGGEDFDN+MV+HFV++FK+KYKKD+ NKRA+RRLRTACERAKRTLSSSTQ
Sbjct: 220 KSTAGDTHLGGEDFDNKMVDHFVKQFKQKYKKDITPNKRAMRRLRTACERAKRTLSSSTQ 279
Query: 436 ASIEIDSLFEGIDFYTSITRARFE 507
ASIEIDSLFEGIDFYTSITRARFE
Sbjct: 280 ASIEIDSLFEGIDFYTSITRARFE 303
Score = 146 bits (354), Expect = 1e-35
Identities = 71/84 (84%), Positives = 77/84 (91%)
Frame = +2
Query: 2 LGKTVQNAVITVPAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAXAYGLDKKGTGERN 181
LG V +AV+TVPAYF+DSQRQATKDAGTI+GLNVLRIINEPTAAA AYGLDKK ERN
Sbjct: 135 LGAKVTDAVVTVPAYFHDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKVGVERN 194
Query: 182 VLIFDLGGGTFDVSILTIEDGIFE 253
VLI+DLGGGTFDVS+LTIEDGIFE
Sbjct: 195 VLIYDLGGGTFDVSVLTIEDGIFE 218
>SB_8490| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 640
Score = 160 bits (388), Expect = 7e-40
Identities = 73/84 (86%), Positives = 80/84 (95%)
Frame = +1
Query: 256 KSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLATNKRALRRLRTACERAKRTLSSSTQ 435
KSTAGDTHLGGEDFDNR+VNHFV EFKRKYKKD++ N RA+RRLRTACERAKRTLSSST+
Sbjct: 221 KSTAGDTHLGGEDFDNRLVNHFVAEFKRKYKKDMSKNSRAMRRLRTACERAKRTLSSSTE 280
Query: 436 ASIEIDSLFEGIDFYTSITRARFE 507
ASIE+DSLFEGIDFYT I+RARFE
Sbjct: 281 ASIEVDSLFEGIDFYTKISRARFE 304
Score = 145 bits (352), Expect = 2e-35
Identities = 71/85 (83%), Positives = 79/85 (92%), Gaps = 1/85 (1%)
Frame = +2
Query: 2 LGKTVQNAVITVPAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAXAYGLDKKGTGERN 181
LG+ V +AVITVPAYFNDSQRQATKDAGTI+GLNVLR+INEPTAAA AYGLDK +GE+N
Sbjct: 135 LGQKVTSAVITVPAYFNDSQRQATKDAGTIAGLNVLRVINEPTAAALAYGLDKSLSGEKN 194
Query: 182 VLIFDLGGGTFDVSILTIEDG-IFE 253
VLIFDLGGGTFDVSILTI+DG +FE
Sbjct: 195 VLIFDLGGGTFDVSILTIDDGSLFE 219
>SB_56180| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 746
Score = 154 bits (373), Expect = 5e-38
Identities = 72/84 (85%), Positives = 79/84 (94%)
Frame = +1
Query: 256 KSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLATNKRALRRLRTACERAKRTLSSSTQ 435
KST GDTHLGGEDFDN MV+ FV++FK+KYKKD+ NKRALRRLRTACERAKRTLSSSTQ
Sbjct: 313 KSTHGDTHLGGEDFDNNMVDFFVKQFKQKYKKDITPNKRALRRLRTACERAKRTLSSSTQ 372
Query: 436 ASIEIDSLFEGIDFYTSITRARFE 507
ASIEIDSL++GIDFYTSITRARFE
Sbjct: 373 ASIEIDSLYDGIDFYTSITRARFE 396
Score = 146 bits (355), Expect = 7e-36
Identities = 72/84 (85%), Positives = 76/84 (90%)
Frame = +2
Query: 2 LGKTVQNAVITVPAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAXAYGLDKKGTGERN 181
LG V +AV+TVPAYFNDSQRQATKDAG ISGLNVLRIINEPTAAA AYGLDKK ERN
Sbjct: 228 LGCKVTDAVVTVPAYFNDSQRQATKDAGVISGLNVLRIINEPTAAAIAYGLDKKVGQERN 287
Query: 182 VLIFDLGGGTFDVSILTIEDGIFE 253
VLIFDLGGGTFDVS+L+IEDGIFE
Sbjct: 288 VLIFDLGGGTFDVSVLSIEDGIFE 311
Score = 50.4 bits (115), Expect = 9e-07
Identities = 23/28 (82%), Positives = 25/28 (89%)
Frame = +2
Query: 2 LGKTVQNAVITVPAYFNDSQRQATKDAG 85
LG V +AV+TVPAYFNDSQRQATKDAG
Sbjct: 160 LGCKVTDAVVTVPAYFNDSQRQATKDAG 187
>SB_45647| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 1327
Score = 139 bits (337), Expect = 1e-33
Identities = 64/84 (76%), Positives = 77/84 (91%)
Frame = +2
Query: 2 LGKTVQNAVITVPAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAXAYGLDKKGTGERN 181
LGK V +AV+TVPAYFND+QRQATKDAG I+GL V+RIINEPTAAA AYG+DKK GE+N
Sbjct: 833 LGKKVTHAVVTVPAYFNDAQRQATKDAGAIAGLTVMRIINEPTAAAIAYGMDKK-EGEKN 891
Query: 182 VLIFDLGGGTFDVSILTIEDGIFE 253
+L+FDLGGGTFDVS+LTI++G+FE
Sbjct: 892 ILVFDLGGGTFDVSLLTIDNGVFE 915
Score = 96.7 bits (230), Expect = 1e-20
Identities = 43/83 (51%), Positives = 61/83 (73%)
Frame = +1
Query: 259 STAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLATNKRALRRLRTACERAKRTLSSSTQA 438
+T GDTHLGGEDFD ++ HF++ +K+K K++ + RA+++LR E+AKR LS+ QA
Sbjct: 918 ATNGDTHLGGEDFDQNVMEHFIKLYKKKKGKNIRKDNRAVQKLRREVEKAKRALSTQHQA 977
Query: 439 SIEIDSLFEGIDFYTSITRARFE 507
+EI+S FEG DF +TRARFE
Sbjct: 978 RVEIESFFEGEDFSEMLTRARFE 1000
>SB_51590| Best HMM Match : HSP70 (HMM E-Value=4.4e-36)
Length = 437
Score = 95.9 bits (228), Expect = 2e-20
Identities = 48/83 (57%), Positives = 61/83 (73%)
Frame = +2
Query: 2 LGKTVQNAVITVPAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAXAYGLDKKGTGERN 181
L TV AV++VPA F+ QR AT A +++G+ VLR+INEPTAAA AYGL KK G N
Sbjct: 165 LTTTVTKAVMSVPAEFDIKQRNATVKAASLAGITVLRVINEPTAAALAYGLHKK-EGVAN 223
Query: 182 VLIFDLGGGTFDVSILTIEDGIF 250
V++ DLGGGT DVS+L I+ G+F
Sbjct: 224 VMVVDLGGGTLDVSLLNIQGGMF 246
Score = 46.0 bits (104), Expect = 2e-05
Identities = 28/86 (32%), Positives = 49/86 (56%), Gaps = 5/86 (5%)
Frame = +1
Query: 265 AGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLATNKRALRRLRTACERAKRTLSSSTQASI 444
AG+ LGG+DF+ R + + +Q +++ + L T ++RLR E AK L+ + + +I
Sbjct: 252 AGNNRLGGQDFNARFMQYLLQLIHKRFNRQL-TCSEDIQRLRQEVEAAKINLTRTNEVTI 310
Query: 445 E--IDSLFEG---IDFYTSITRARFE 507
+ + SL EG + F +I+R FE
Sbjct: 311 KLMLPSLSEGKKIVKFKETISRKMFE 336
>SB_57217| Best HMM Match : Helicase_C (HMM E-Value=0.049)
Length = 179
Score = 73.3 bits (172), Expect = 1e-13
Identities = 48/86 (55%), Positives = 54/86 (62%), Gaps = 26/86 (30%)
Frame = +2
Query: 2 LGKTVQNAVITVPAYFNDSQRQATKDAGTISGLN------------------------VL 109
LG+ V+ AVITVPA+FND+QRQATKDAGTI+GL+ VL
Sbjct: 34 LGQAVKRAVITVPAHFNDAQRQATKDAGTIAGLDVLSRTASERPPSRFRRRRPHGRSRVL 93
Query: 110 RIINEPTAAAXAYGLDKK--GTGERN 181
RIINEPTAAA AYGLDK G ERN
Sbjct: 94 RIINEPTAAAIAYGLDKARGGKAERN 119
>SB_38725| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 766
Score = 70.1 bits (164), Expect = 1e-12
Identities = 33/65 (50%), Positives = 45/65 (69%)
Frame = +1
Query: 256 KSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLATNKRALRRLRTACERAKRTLSSSTQ 435
K+T GDT+LGGEDFDN ++ + EFK++ DL+ + AL+RLR A E+AK LSSS Q
Sbjct: 27 KATNGDTYLGGEDFDNTLLKFLIAEFKKESGVDLSKDSMALQRLREAAEKAKIELSSSVQ 86
Query: 436 ASIEI 450
I +
Sbjct: 87 TDINL 91
Score = 41.1 bits (92), Expect = 5e-04
Identities = 15/24 (62%), Positives = 21/24 (87%)
Frame = +2
Query: 182 VLIFDLGGGTFDVSILTIEDGIFE 253
+ ++DLGGGTFD+SIL I+ G+FE
Sbjct: 2 IAVYDLGGGTFDISILEIQKGVFE 25
>SB_15336| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1068
Score = 69.3 bits (162), Expect = 2e-12
Identities = 36/88 (40%), Positives = 55/88 (62%), Gaps = 1/88 (1%)
Frame = +1
Query: 247 LRGKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLATNKRALRRLRTACERAKRTLSS 426
L+ STA + +LGG DFD +V HF QEFK KYK D+ ++ +A +L CE+ K+ +S+
Sbjct: 277 LKVLSTAVEPNLGGRDFDYVLVEHFAQEFKTKYKIDVHSSIKAKIKLGAECEKLKKLMSA 336
Query: 427 ST-QASIEIDSLFEGIDFYTSITRARFE 507
+T + I I+ E D + + RA+FE
Sbjct: 337 NTSEIPINIECFMEDKDVHGRMKRAQFE 364
Score = 60.1 bits (139), Expect = 1e-09
Identities = 31/80 (38%), Positives = 46/80 (57%), Gaps = 3/80 (3%)
Frame = +2
Query: 14 VQNAVITVPAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAXAYGLDKKG---TGERNV 184
V + VI+VP+Y+ D QR+ DA +GLN LR++N+ TA + AYG+ K+ RNV
Sbjct: 196 VTDCVISVPSYYTDRQRRCMLDASATAGLNCLRLMNDTTAVSLAYGIYKQDLPTDKPRNV 255
Query: 185 LIFDLGGGTFDVSILTIEDG 244
+ D+G + V I G
Sbjct: 256 VFVDIGHSSLQVCITAFLKG 275
>SB_47391| Best HMM Match : HSP70 (HMM E-Value=2.7e-07)
Length = 592
Score = 60.9 bits (141), Expect = 6e-10
Identities = 33/84 (39%), Positives = 50/84 (59%), Gaps = 5/84 (5%)
Frame = +1
Query: 259 STAGDTHLGGEDFDNRMVNHFVQEFKR-----KYKKDLATNKRALRRLRTACERAKRTLS 423
+T D LGG +FD +++ +FKR K+K D TNKR+ +L+T+ E+ K LS
Sbjct: 182 ATEYDGALGGRNFDEVLLDLLANDFKRQVLLWKWKIDPLTNKRSKTKLQTSAEQCKNILS 241
Query: 424 SSTQASIEIDSLFEGIDFYTSITR 495
+ A+ +DSL EGIDF ++R
Sbjct: 242 TLESANCSVDSLCEGIDFQGQVSR 265
>SB_31398| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1019
Score = 54.8 bits (126), Expect = 4e-08
Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 2/86 (2%)
Frame = +1
Query: 256 KSTAGDTHLGGEDFDNRMVNHFVQEFKR--KYKKDLATNKRALRRLRTACERAKRTLSSS 429
K D LGG D R+ +H VQ FK+ K+K ++ + RA+ + R K+ LS++
Sbjct: 202 KGIGFDRTLGGHAIDMRLRDHLVQLFKKNYKFKGEVTQSSRAMAKFYKEALRVKQVLSAN 261
Query: 430 TQASIEIDSLFEGIDFYTSITRARFE 507
+ +I+ +F+G DF +TR E
Sbjct: 262 NEIFAQIEGVFDGKDFRVKVTREELE 287
Score = 53.6 bits (123), Expect = 1e-07
Identities = 27/76 (35%), Positives = 48/76 (63%), Gaps = 4/76 (5%)
Frame = +2
Query: 14 VQNAVITVPAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAXAYGLDKK----GTGERN 181
+++ V+TVP +FN ++R+A A + GLNVL+I+N TA A YGL ++ T E++
Sbjct: 105 IKDVVLTVPPFFNQAERRALLRAAELVGLNVLQIMNSNTAVALNYGLFQQKSFNDTLEKH 164
Query: 182 VLIFDLGGGTFDVSIL 229
+ +D+G + +I+
Sbjct: 165 FMFYDMGASSTVATIV 180
>SB_29289| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 956
Score = 31.1 bits (67), Expect = 0.59
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +3
Query: 318 LCPGVQEEIQKGPRYQQESS*AFAYCM*EGK 410
LCP ++ + GP +++E AFA C+ GK
Sbjct: 169 LCPSPEQNGEPGPMFEREGGDAFANCVARGK 199
>SB_50183| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 717
Score = 29.9 bits (64), Expect = 1.4
Identities = 28/78 (35%), Positives = 35/78 (44%)
Frame = -1
Query: 381 PKSSLVGSEVLFVFPLELLDKVVHHAIVKVLTSQVGVAGGGFPSKIPSSMVRMDTSKVPP 202
P S ++ V P +V HA LT V G PS IP S+ + S+VPP
Sbjct: 111 PASDPPSPDIPVVVPDHRPFAIVSHAGPPGLTPVCSVVNG-IPSPIPRSVNQAFGSRVPP 169
Query: 201 PRSKISTFRSPVPFLSRP 148
+S T R PV SRP
Sbjct: 170 LKS--PTERGPV--YSRP 183
>SB_41892| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 382
Score = 29.5 bits (63), Expect = 1.8
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +3
Query: 309 GEPLCPGVQEEIQKGPRYQQESS*AFAYCM 398
G LCP ++ + GP +++E S AFA C+
Sbjct: 218 GYKLCPLPEQNGEPGPMFEREGSDAFANCV 247
>SB_28120| Best HMM Match : ScdA_N (HMM E-Value=6.5)
Length = 452
Score = 29.5 bits (63), Expect = 1.8
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +3
Query: 318 LCPGVQEEIQKGPRYQQESS*AFAYCM*EGK 410
LCP ++ GP +++E S AFA C+ GK
Sbjct: 206 LCPLPEQNGGPGPMFEREGSDAFANCVTRGK 236
>SB_10754| Best HMM Match : C2 (HMM E-Value=5.1e-40)
Length = 2057
Score = 29.1 bits (62), Expect = 2.4
Identities = 19/53 (35%), Positives = 24/53 (45%)
Frame = -3
Query: 289 HLPSGCRRRWISLEDTILDGKDGHVEGTAAEVKDKYISFSSTLFVKTVSXRSS 131
+LP+ CR L IL GKD VEG D Y+ S + K V R +
Sbjct: 407 YLPTACR-----LTVAILKGKDLRVEGEETTEIDTYVKVSMIMGGKAVKKRKT 454
>SB_27085| Best HMM Match : Filamin (HMM E-Value=1.5)
Length = 634
Score = 28.7 bits (61), Expect = 3.1
Identities = 11/23 (47%), Positives = 18/23 (78%)
Frame = +2
Query: 182 VLIFDLGGGTFDVSILTIEDGIF 250
V I+DLG GT++++IL E G++
Sbjct: 319 VPIYDLGNGTYEMAILFHEPGVY 341
>SB_38784| Best HMM Match : Apo-VLDL-II (HMM E-Value=8.3)
Length = 439
Score = 28.3 bits (60), Expect = 4.1
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +3
Query: 318 LCPGVQEEIQKGPRYQQESS*AFAYCM 398
LCP ++ + GP +++E S AFA C+
Sbjct: 107 LCPLPEQNGEPGPMFEREGSDAFANCV 133
>SB_55740| Best HMM Match : C1_1 (HMM E-Value=3.6)
Length = 533
Score = 28.3 bits (60), Expect = 4.1
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +3
Query: 318 LCPGVQEEIQKGPRYQQESS*AFAYCM 398
LCP ++ + GP +++E S AFA C+
Sbjct: 74 LCPLPEQNGEPGPMFEREGSDAFANCV 100
>SB_41920| Best HMM Match : Filamin (HMM E-Value=0.00015)
Length = 600
Score = 28.3 bits (60), Expect = 4.1
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = +2
Query: 188 IFDLGGGTFDVSILTIEDGIF 250
+FDLG G+++V L +E G++
Sbjct: 311 VFDLGNGSYEVLFLVMEPGVY 331
>SB_32584| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 665
Score = 27.9 bits (59), Expect = 5.5
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +2
Query: 197 LGGGTFDVSILTIEDGIFEGNPPPATPTWEVRTLT 301
L G FD+S + +E GIF + PP + ++ R+ T
Sbjct: 253 LQSGQFDLSDVKVECGIFNPSLPPLSIFFDFRSTT 287
>SB_27251| Best HMM Match : Extensin_2 (HMM E-Value=0.077)
Length = 1043
Score = 27.9 bits (59), Expect = 5.5
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = -1
Query: 270 AGGGFPSKIPSSMVRMDTSKVP-PPRSKISTFRSPVPFLSRP*AXAAAVGSLMIRRTFKP 94
+ G P K + + + +P PP K+S SP+ L R + A V LM++ +P
Sbjct: 361 SSGHLPEKPQPVIPGLPSKYLPRPPSPKLSKSPSPLQKLRRSPSPAEMVQQLMMQTQMQP 420
Query: 93 EMVPA 79
P+
Sbjct: 421 RRPPS 425
>SB_59101| Best HMM Match : PT (HMM E-Value=0.026)
Length = 386
Score = 27.9 bits (59), Expect = 5.5
Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 7/77 (9%)
Frame = -1
Query: 312 HHAIVKVLTSQVGVAGGGF----PSKIPSSMVRMDTSKVPP---PRSKISTFRSPVPFLS 154
H + V++ GVAGGG S P DT ++P P+ S S +P+ S
Sbjct: 108 HPPVATVVSHAFGVAGGGLRLSHNSSWPCVTASSDTVRLPNNSWPQPVGSHNPSCLPWSS 167
Query: 153 RP*AXAAAVGSLMIRRT 103
P A GSLM R +
Sbjct: 168 MPSNAITANGSLMSRNS 184
>SB_57953| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 712
Score = 27.5 bits (58), Expect = 7.2
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = -3
Query: 265 RWISLEDTILDGKDGHVEGTAAEVKDKY-ISFSSTLFVKTVSXRSSS 128
RWI+L +++ + V G+A E++ KY +++S L +T R S
Sbjct: 464 RWINLRNSLREQLSPGVLGSALELRVKYFVNYSQLLLEETRHNRQVS 510
>SB_49281| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 962
Score = 27.5 bits (58), Expect = 7.2
Identities = 18/62 (29%), Positives = 28/62 (45%)
Frame = -1
Query: 255 PSKIPSSMVRMDTSKVPPPRSKISTFRSPVPFLSRP*AXAAAVGSLMIRRTFKPEMVPAS 76
P+ ++ DT+ PP S S F++ S AV S + T KP ++PA+
Sbjct: 715 PTSTTIPLLTADTTTSKPPSSSTSIFQAAPATTSNTTTQIPAVAS-KLPDTTKPPILPAN 773
Query: 75 FV 70
V
Sbjct: 774 LV 775
>SB_30476| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 60
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 3/26 (11%)
Frame = +1
Query: 265 AGDTHLGGEDFD---NRMVNHFVQEF 333
AGD +GGEDFD +V+ F++ F
Sbjct: 19 AGDNDIGGEDFDVMSKSVVSRFIRHF 44
>SB_31943| Best HMM Match : ResIII (HMM E-Value=1.6)
Length = 1053
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +3
Query: 318 LCPGVQEEIQKGPRYQQESS*AFAYCM*EGKEDL 419
LCP ++ + GP +++E AFA C+ D+
Sbjct: 202 LCPLPEQNGEHGPMFEREGIYAFANCVARSSSDM 235
>SB_29335| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 840
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +3
Query: 318 LCPGVQEEIQKGPRYQQESS*AFAYCM*EGKEDL 419
LCP ++ + GP +++E AFA C+ D+
Sbjct: 140 LCPLPEQNGEHGPMFEREGIYAFANCVARSSSDM 173
>SB_6887| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 875
Score = 27.1 bits (57), Expect = 9.6
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Frame = +1
Query: 259 STAGDTHLGGEDFDNRMVNHF---VQEFKRKYKKDLATNKRALRR 384
S A T + G++ N V F + ++KR+Y+K++ KR+L R
Sbjct: 664 SYASITFINGDEAGNMYVALFGAMLFQYKREYRKEIKQEKRSLCR 708
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,186,287
Number of Sequences: 59808
Number of extensions: 351814
Number of successful extensions: 1345
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1340
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1197191618
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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