Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20712
         (528 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.63 
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   2.6  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   4.5  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    21   7.8  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.6 bits (51), Expect = 0.63
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -3

Query: 271 RRRWISLEDTILDGKDGHVEGTAAEVKDKYISFSST 164
           RRRW   +DT+  G       TA      Y +FSS+
Sbjct: 43  RRRWKQYQDTLYSGTRSSESLTAQAHHRLYPAFSSS 78


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +2

Query: 59  QRQATKDAGTISGLNVLRIINEPTAAAXAYG 151
           Q +A K A  +   N   II+EPT     YG
Sbjct: 353 QAEAEKHAAMLYQYNFNIIISEPTERISPYG 383


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 10/41 (24%), Positives = 17/41 (41%)
 Frame = +2

Query: 98  LNVLRIINEPTAAAXAYGLDKKGTGERNVLIFDLGGGTFDV 220
           LN+  I   P+     Y +      + N+L  DL  G  ++
Sbjct: 787 LNISDIALYPSQTTHGYDIYASSIDKENILFLDLSTGKVEM 827


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +1

Query: 25  SYHGSRVLQ*LSKTSHKRCRYHLRLERS 108
           SY   R  +   KTS +R R  +  ERS
Sbjct: 271 SYKNEREYRKYGKTSKERSRDRMERERS 298


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,532
Number of Sequences: 438
Number of extensions: 3085
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14845611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)