Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20711
         (578 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    27   0.087
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    23   1.9  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   4.3  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      22   4.3  
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    21   5.7  

>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 27.5 bits (58), Expect = 0.087
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = -3

Query: 465 LCTSLASTSDLAK*CVCCRCVGDNAGLYSSGEPGDTGPLFDIEANLC 325
           +CT      D +   V   CV D + L S     + G ++D+E N+C
Sbjct: 442 VCTKEGIVRDPSDCSVYYTCVSDGSKLVSIQRKCNHGLVYDLELNIC 488


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -1

Query: 404 LATTLDCTRAESRETPDRCSI 342
           L TTL CT+A     PD CSI
Sbjct: 417 LTTTL-CTKAGYVRDPDDCSI 436


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = -1

Query: 545 LGRRVLVVEADLVSSWSSPLAATRG 471
           L RR   +   L   WSS   ATRG
Sbjct: 531 LARRERQLHMQLYPDWSSRANATRG 555


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = -1

Query: 545 LGRRVLVVEADLVSSWSSPLAATRG 471
           L RR   +   L   WSS   ATRG
Sbjct: 423 LARRERQLHMQLYPDWSSRANATRG 447


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 11/23 (47%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
 Frame = -1

Query: 179 REILSDQSAHAQLL--PAHEGLP 117
           RE LS  SAH  L+  P H  +P
Sbjct: 52  RESLSPSSAHTVLIPQPLHPSVP 74


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,898
Number of Sequences: 336
Number of extensions: 2560
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14412858
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)