Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20711
         (578 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    29   0.37 
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc...    27   1.5  
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma...    27   1.5  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    26   3.5  
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces...    26   4.6  

>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 964

 Score = 29.5 bits (63), Expect = 0.37
 Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 2/95 (2%)
 Frame = +2

Query: 254 PTGSSQ-PSTPNKSHSYNDYMISLQHKLASISNSGPVSPGSPLEYSPALSPTHRQHTHHL 430
           PT S + P+ P+ +  +       ++   S S   P SP     Y P      + +    
Sbjct: 490 PTRSVEAPTLPSYAPRHPTQANGSRYMNPSTSRMTPQSPYMQNYYRPHAQMQDQNNMMSY 549

Query: 431 AKSDVEASEVHKSRHVS-QLADWTTSSQDQPPLQA 532
             S  +A E+ KSR ++ Q    T SS +QPP Q+
Sbjct: 550 MLSQQKAMEIAKSREMAIQRNTQTLSSGNQPPQQS 584


>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 781

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
 Frame = +2

Query: 296 SYNDYMISL-QHKLASISNSGPVSPG--SPLEYSPALSPTHRQHTHHLAKSDVEASEVHK 466
           S +DY  S  + ++   ++S    PG  SPL+ +P  SP  ++HT       V AS  HK
Sbjct: 58  SPSDYKSSAHEQRVNHTTDSMAHVPGNNSPLQ-TPQKSPPRQKHTAPATPIPVSASRHHK 116

Query: 467 SRH 475
             H
Sbjct: 117 PHH 119


>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 963

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 1/90 (1%)
 Frame = +2

Query: 254 PTGSSQPSTPNKSHSYNDYMISLQHKLASISNSGPVSPGSPLEYSPALS-PTHRQHTHHL 430
           P  +S   T N    Y +  ISL    A+ SN    S   P  YSP++   T+++     
Sbjct: 287 PQKASVLGTVNNYRQYQNSFISLNDYQAAQSNISSPSSRFPTPYSPSVPFGTYQEKEKSY 346

Query: 431 AKSDVEASEVHKSRHVSQLADWTTSSQDQP 520
           ++   E S   +S  +    D ++    QP
Sbjct: 347 SQDHAELSYYQQSPSMMPPYDRSSVYFQQP 376


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 24/92 (26%), Positives = 33/92 (35%)
 Frame = +2

Query: 254 PTGSSQPSTPNKSHSYNDYMISLQHKLASISNSGPVSPGSPLEYSPALSPTHRQHTHHLA 433
           P  ++   T     S  +  IS     +++S SG  S      Y    S T    T HL+
Sbjct: 567 PEETTTTMTTTTCSSRPEETISTVSTTSTVSESGSSSASITSTYP---SSTLSMTTSHLS 623

Query: 434 KSDVEASEVHKSRHVSQLADWTTSSQDQPPLQ 529
            S V +S  H S   S       S+     LQ
Sbjct: 624 SSSVHSSSAHSSSSRSSSMSLPPSAGSSTSLQ 655


>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 967

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
 Frame = +2

Query: 263 SSQPSTPNKSHSYNDYMISLQHK-LASISNSGPVSPGSPLEYSPALSPTHRQHTHHLAKS 439
           +SQ  TP ++H+  +YM    HK LA +   G         YS A SP     +  ++++
Sbjct: 87  NSQEQTPLRTHTPVEYMSDSIHKSLADLQLGGS-------SYSVAESPVPVLQSSAVSEA 139

Query: 440 D--VEASEVHKSRHVSQ 484
           D    A   H SR  S+
Sbjct: 140 DDMASAHSAHPSRKASR 156


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,180,242
Number of Sequences: 5004
Number of extensions: 38900
Number of successful extensions: 123
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)