Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20711
(578 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0711 - 35682293-35682952 29 2.0
03_02_0550 + 9407280-9407375,9407474-9407560,9408230-9408317,940... 29 2.0
10_08_0006 - 14035990-14036135,14036246-14036339,14036845-140371... 29 3.5
04_01_0199 - 2377406-2377573,2377649-2377730,2378006-2378274,237... 28 4.7
02_05_0568 - 30034280-30034393,30034888-30035163,30035246-300353... 28 4.7
02_04_0444 - 22974979-22975251,22975338-22975379,22975471-229754... 28 4.7
02_02_0011 + 6083431-6085541,6086659-6086779,6087188-6087247,608... 28 4.7
01_01_0464 - 3431298-3431315,3431586-3433339,3433340-3433589,343... 23 5.2
12_02_0995 + 25104303-25104486,25105164-25105275,25106466-251065... 28 6.2
12_01_0707 - 6133561-6133947 28 6.2
04_04_0234 - 23805383-23805502,23805652-23805733,23805820-238060... 28 6.2
03_06_0428 + 33860982-33861321,33861410-33861999,33862520-33862582 28 6.2
03_02_0737 + 10820728-10821096,10821320-10821532,10821631-108217... 28 6.2
01_03_0117 + 12684729-12685886,12685978-12686145,12686292-126863... 28 6.2
08_02_1074 + 24135988-24137454 27 8.2
07_01_0172 - 1201595-1201912,1202637-1202723,1202836-1202895,120... 27 8.2
06_01_1171 - 10007714-10009141 27 8.2
03_05_0746 + 27352120-27352200,27354017-27354199 27 8.2
>03_06_0711 - 35682293-35682952
Length = 219
Score = 29.5 bits (63), Expect = 2.0
Identities = 18/68 (26%), Positives = 31/68 (45%)
Frame = +2
Query: 254 PTGSSQPSTPNKSHSYNDYMISLQHKLASISNSGPVSPGSPLEYSPALSPTHRQHTHHLA 433
PT S+ P+ + H + + Q + S++ +SP +P E SP +P+H H A
Sbjct: 37 PTAST-PAADERLHPADAALAPSQPPSEASSSAAALSPPAPPETSPLPAPSHSPPVPHSA 95
Query: 434 KSDVEASE 457
+ E
Sbjct: 96 APEPSPME 103
>03_02_0550 +
9407280-9407375,9407474-9407560,9408230-9408317,
9408871-9408962,9409068-9409132,9409220-9409308,
9409402-9409479,9409567-9409660,9409745-9409811,
9409907-9409970,9410096-9410136,9410221-9410412
Length = 350
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = +2
Query: 251 KPTGSSQPSTPNKSHSYNDYMISLQHKLASISNSGPVSPGSPLEYS 388
+P +P T +S Y M++ KL + N+GP++ G+P E++
Sbjct: 232 EPLTVQKPGTQTRSFCYVADMVNGLIKLMNGDNTGPINLGNPGEFT 277
>10_08_0006 -
14035990-14036135,14036246-14036339,14036845-14037176,
14038040-14038094,14038682-14038750,14038940-14039039,
14039212-14039255,14039705-14039873,14040262-14040333,
14040439-14040519,14040586-14040650,14040796-14041260
Length = 563
Score = 28.7 bits (61), Expect = 3.5
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +2
Query: 254 PTGSSQPSTPNKSHSYNDYMISLQ-HKLASISNSGPVSPGSP 376
P+ S+PS+P+ SHS +D SL A + + P S G P
Sbjct: 53 PSSPSRPSSPSSSHSDDDDDDSLHTFTAARLDGAPPSSSGRP 94
>04_01_0199 -
2377406-2377573,2377649-2377730,2378006-2378274,
2379648-2379788,2380891-2381076,2381529-2381765,
2382077-2382292,2382389-2382719,2382842-2382954,
2383288-2383602,2383713-2383840,2385274-2385547
Length = 819
Score = 28.3 bits (60), Expect = 4.7
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +2
Query: 293 HSYNDYMISLQHKLASISNSGPVSPGSPLEYSPALSPT 406
H Y D I + KL I + G + PG +Y ++P+
Sbjct: 535 HFYQDGKIEAEVKLTGILSVGALMPGEQRKYGTTIAPS 572
>02_05_0568 -
30034280-30034393,30034888-30035163,30035246-30035371,
30035595-30035753,30035893-30036063,30036374-30036493,
30036565-30036924,30038800-30039686,30039790-30040363,
30041379-30041507,30042423-30042494,30042572-30042728,
30042974-30043023,30043569-30044327
Length = 1317
Score = 28.3 bits (60), Expect = 4.7
Identities = 33/116 (28%), Positives = 43/116 (37%), Gaps = 8/116 (6%)
Frame = +2
Query: 254 PTGSSQPSTPNKSHSYNDYMI----SLQHKLASISNSGPVS----PGSPLEYSPALSPTH 409
PTG+ P+ PN S + M+ S A I GP + P + Y PA P H
Sbjct: 4 PTGNPNPN-PNPSTPFEVSMLFKPPSNAPAAAPIFPGGPAAGPPPPSAAYSYPPATPPFH 62
Query: 410 RQHTHHLAKSDVEASEVHKSRHVSQLADWTTSSQDQPPLQARAAQGRVHTTQRRGA 577
R H + + A H R V T + P A AA +Q GA
Sbjct: 63 RAPFLHYPQDPMAAP--HMPRPVISF-PMPTPNPAAIPSAAAAAAAAAGPSQNHGA 115
>02_04_0444 -
22974979-22975251,22975338-22975379,22975471-22975479,
22975783-22975968,22976063-22976299,22982410-22982625,
22982729-22983059,22983410-22983522,22984538-22984647,
22985325-22985439
Length = 543
Score = 28.3 bits (60), Expect = 4.7
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +2
Query: 293 HSYNDYMISLQHKLASISNSGPVSPGSPLEYSPALSPT 406
H Y D I + KL I + G + PG +Y ++P+
Sbjct: 371 HFYQDGKIEAEVKLTGILSLGALMPGEQRKYGTTIAPS 408
>02_02_0011 +
6083431-6085541,6086659-6086779,6087188-6087247,
6087354-6088391,6089733-6089925,6090326-6090375,
6090470-6090744,6091114-6091180,6091189-6091278,
6091301-6091381,6091435-6091593
Length = 1414
Score = 28.3 bits (60), Expect = 4.7
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Frame = +2
Query: 260 GSSQPSTPNKSHSYNDYMISLQ--HKLASISNSGPVSPGSPLEYSPA---LSPTHRQHTH 424
G+S+P TP S +++ +SL+ ++ SI S P GS ++SPA L PT
Sbjct: 74 GASRPETPRSSGAHSLSRVSLRPPQQVLSIRTSLPTMVGS--QHSPAGKKLQPTIASPKV 131
Query: 425 HLAKSDVEASEVHKS 469
+ KS S +S
Sbjct: 132 QILKSTQSQSSNKRS 146
>01_01_0464 -
3431298-3431315,3431586-3433339,3433340-3433589,
3433716-3434041,3434297-3434618
Length = 889
Score = 23.4 bits (48), Expect(2) = 5.2
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = +1
Query: 82 IWV*LGRTCR*GGRPSWAGRSW 147
+W+ L + G PSWA SW
Sbjct: 405 LWLDLSKNQIHGAIPSWAWESW 426
Score = 23.0 bits (47), Expect(2) = 5.2
Identities = 6/9 (66%), Positives = 7/9 (77%)
Frame = +1
Query: 142 SWAWADWSD 168
SWAW W+D
Sbjct: 420 SWAWESWND 428
>12_02_0995 +
25104303-25104486,25105164-25105275,25106466-25106554,
25106635-25106703,25106784-25106913,25107073-25107231,
25107364-25107736,25108070-25108182,25108429-25108624,
25108855-25109288,25109360-25109495,25109668-25111086
Length = 1137
Score = 27.9 bits (59), Expect = 6.2
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Frame = +2
Query: 263 SSQPSTPNKSHSYNDYMISLQHKLASISNSGPVSPGSPLEYSPALSPTHRQHT-HHLAKS 439
SS S +K H + D + Q K + + +SP ++SP +QH KS
Sbjct: 652 SSSTSVNSKDHQHEDDRVVSQKKQNAHRQTDVMSPSKLRMTESSVSPIKKQHIFSQQPKS 711
Query: 440 DVEASEVHKSRHVSQLADWTTSS 508
+E++ SR S+ + T+S
Sbjct: 712 SLESANNLSSR-ASEASGAVTAS 733
>12_01_0707 - 6133561-6133947
Length = 128
Score = 27.9 bits (59), Expect = 6.2
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -3
Query: 549 RPWAARACSGG*SCELVVQSASCDTWR 469
RPW +R C GG + V + A +WR
Sbjct: 61 RPWWSRRCGGGCAASWVARPAVQASWR 87
>04_04_0234 -
23805383-23805502,23805652-23805733,23805820-23806088,
23806384-23806524,23806751-23806936,23807186-23807422,
23807505-23807720,23807816-23808146,23808257-23808369,
23808691-23808996,23809078-23809187,23810226-23810363,
23811230-23811497
Length = 838
Score = 27.9 bits (59), Expect = 6.2
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +2
Query: 293 HSYNDYMISLQHKLASISNSGPVSPGSPLEYSPALSP 403
H Y D I + KL I + G + PG +Y ++P
Sbjct: 570 HFYQDGKIEAEVKLTGILSLGALMPGESRKYGTTIAP 606
>03_06_0428 + 33860982-33861321,33861410-33861999,33862520-33862582
Length = 330
Score = 27.9 bits (59), Expect = 6.2
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +2
Query: 344 SNSGPVSPGSPLEYSPALSPTHRQHTHH 427
S S SPGSP +P+ +P H H H
Sbjct: 173 STSPSASPGSPPAATPSSAPRHDAHPAH 200
>03_02_0737 +
10820728-10821096,10821320-10821532,10821631-10821732,
10821755-10821793,10821830-10821967,10822182-10822486,
10822784-10822937,10823279-10823404
Length = 481
Score = 27.9 bits (59), Expect = 6.2
Identities = 20/50 (40%), Positives = 22/50 (44%)
Frame = +2
Query: 371 SPLEYSPALSPTHRQHTHHLAKSDVEASEVHKSRHVSQLADWTTSSQDQP 520
S L S ALSPTH H HHL AS + R A S +D P
Sbjct: 16 SHLRSSGALSPTHHHH-HHLDNGAALASLLGLGRGGLPAAAGPWSPRDPP 64
>01_03_0117 +
12684729-12685886,12685978-12686145,12686292-12686336,
12686438-12687280
Length = 737
Score = 27.9 bits (59), Expect = 6.2
Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Frame = +2
Query: 254 PTGSSQPSTPNKSHSYNDYMISLQHK-LASISNSGPVSPGSPLEYSPALSPTHRQHTHHL 430
P+ S P+ SH+ M + L +SP +P P LSP + THH
Sbjct: 134 PSLSPPAKAPSHSHAKTPSMPPAERPALPPTKAPAAISPATP----PQLSPANAHSTHHH 189
Query: 431 AK 436
AK
Sbjct: 190 AK 191
>08_02_1074 + 24135988-24137454
Length = 488
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -1
Query: 539 RRVLVVEADLVSSWSSPLAATRG 471
RRV V +D+ + W+ PLAA G
Sbjct: 138 RRVTAVVSDMFTGWTQPLAADLG 160
>07_01_0172 -
1201595-1201912,1202637-1202723,1202836-1202895,
1203007-1203106,1203227-1203633,1204728-1204883,
1204981-1205106,1205503-1205572,1205679-1205767
Length = 470
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +3
Query: 357 RCLPALRSSTVQRCRQRIDSTRII 428
RCLP + VQRCRQ +++++
Sbjct: 424 RCLPESLRAAVQRCRQSRPASKVV 447
>06_01_1171 - 10007714-10009141
Length = 475
Score = 27.5 bits (58), Expect = 8.2
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -1
Query: 548 GLGRRVLVVEADLVSSWSSPLAATRG 471
G G RV+ V +D W+ PLAA G
Sbjct: 115 GEGGRVVAVLSDFFCGWTQPLAAEAG 140
>03_05_0746 + 27352120-27352200,27354017-27354199
Length = 87
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -2
Query: 373 RAGRHRTAVRYRGQLVLQGDH 311
RA + R V+Y G+L+LQG H
Sbjct: 51 RAAKKRKIVKYDGELLLQGAH 71
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,651,293
Number of Sequences: 37544
Number of extensions: 338038
Number of successful extensions: 1325
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1277
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1323
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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