Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20711
(578 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_27310| Best HMM Match : CUB (HMM E-Value=9.7e-17) 31 0.51
SB_23326| Best HMM Match : PH (HMM E-Value=1.9e-11) 29 2.1
SB_345| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_11300| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_51072| Best HMM Match : Extensin_2 (HMM E-Value=5.2) 28 4.8
SB_10901| Best HMM Match : SAM_1 (HMM E-Value=2.5e-09) 28 4.8
SB_55679| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.8
SB_51168| Best HMM Match : Extensin_2 (HMM E-Value=1.3) 28 4.8
SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.8
SB_1703| Best HMM Match : Extensin_2 (HMM E-Value=0.26) 28 4.8
SB_13699| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_58276| Best HMM Match : MIB_HERC2 (HMM E-Value=8.3e-33) 28 6.3
SB_42242| Best HMM Match : NapE (HMM E-Value=3.7) 28 6.3
SB_26663| Best HMM Match : Telo_bind (HMM E-Value=1.8e-17) 28 6.3
>SB_27310| Best HMM Match : CUB (HMM E-Value=9.7e-17)
Length = 761
Score = 31.5 bits (68), Expect = 0.51
Identities = 21/85 (24%), Positives = 38/85 (44%)
Frame = -1
Query: 512 LVSSWSSPLAATRGGTYAPRSPLRQT*PNDACAVDALATTLDCTRAESRETPDRCSI*RP 333
L S+ + P + T++ PL QT PN+ + + L+T S E+P +I
Sbjct: 294 LPSNQTLPTELSSNETFSTELPLNQTLPNELPSNETLSTVAPSNETISTESPSNETI--- 350
Query: 332 TCVAGRSCSRCTSDSCWACSAATSP 258
S + ++++ W S+ SP
Sbjct: 351 -STESPSNEKISTEAPWYASSTMSP 374
>SB_23326| Best HMM Match : PH (HMM E-Value=1.9e-11)
Length = 618
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/44 (29%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = -2
Query: 469 GLMHLARLYVRLSQMMRVLSMR-WRQRWTVLERRAGRHRTAVRY 341
GL+ L ++L + R ++ + W+++W VL R++ R T + Y
Sbjct: 91 GLVKCGYLEMKLPRKQRKVTHKVWKRKWFVLRRKSKRGNTRLEY 134
>SB_345| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1213
Score = 29.1 bits (62), Expect = 2.7
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +2
Query: 404 THRQHTHHLAKSDVEASEVHKSRHVSQLADW 496
T +THHL + HK+RH+ + DW
Sbjct: 746 TMTYNTHHLMSHNTRHLMSHKTRHLMSVLDW 776
>SB_11300| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1148
Score = 28.7 bits (61), Expect = 3.6
Identities = 17/36 (47%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +3
Query: 9 QHQNIGLAHNLALNQNLMGQN-LTHNLGLAGQNLSL 113
Q N L L QN+MGQN L N+ AG NL L
Sbjct: 214 QMGNAALMGQNMLGQNMMGQNMLGQNMMAAGMNLGL 249
>SB_51072| Best HMM Match : Extensin_2 (HMM E-Value=5.2)
Length = 298
Score = 28.3 bits (60), Expect = 4.8
Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Frame = +2
Query: 275 STPNKSHS--YNDYMISLQHKLASISNSGPVSPGSPLEYSPALSPTHRQHTHHLAKS 439
S+P+++H + ++ S + + SIS P++ SP +Y P L P H + T + +S
Sbjct: 209 SSPSQNHPLLHPVHLRSTLYYIQSISVP-PLTTSSPSQYHPLLHPVHLRTTLYYIRS 264
>SB_10901| Best HMM Match : SAM_1 (HMM E-Value=2.5e-09)
Length = 1472
Score = 28.3 bits (60), Expect = 4.8
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Frame = +2
Query: 275 STPNKSHSYNDYMISLQHKLASISNSGPVSPG-SPLEYSPA---LSPTHRQHTHHLAKSD 442
S + S S N+ ++SL ++ NS P P SP E S +SP R HH KS
Sbjct: 374 SVTSSSSSQNNGLLSLS---STCDNSTPHKPPESPTELSTMPQPVSPRERGKAHHSPKSS 430
Query: 443 VEASE 457
E E
Sbjct: 431 PEDGE 435
>SB_55679| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 203
Score = 28.3 bits (60), Expect = 4.8
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = +2
Query: 275 STPNKSHS--YNDYMISLQHKLASISNSGPVSPGSPLEYSPALSPTHRQHTHHLAKS 439
S+P+++H + ++ + + + SIS P++ SP +Y P L P H T + +S
Sbjct: 18 SSPSQNHPLLHPVHLSTTLYYIQSISEP-PLTTSSPSQYHPLLHPVHLSTTPYYIQS 73
>SB_51168| Best HMM Match : Extensin_2 (HMM E-Value=1.3)
Length = 288
Score = 28.3 bits (60), Expect = 4.8
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = +2
Query: 374 PLEYSPALSPTHRQHTHHLAKSDVEASEVHKSRHVSQLADWTTSSQDQPPLQARA 538
P++ + A SP ++H+ + + + +H S++ WT QD P ARA
Sbjct: 26 PVDSTRAESPRGQRHSK-IPPWTAPEQDPPRGQHQSRIPTWTAPQQDPPVDSARA 79
>SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3292
Score = 28.3 bits (60), Expect = 4.8
Identities = 15/42 (35%), Positives = 18/42 (42%)
Frame = -3
Query: 513 SCELVVQSASCDTWRDLCTSLASTSDLAK*CVCCRCVGDNAG 388
SC + CDT +LCT L + K CRC D G
Sbjct: 1333 SCPADYRGQDCDTHLNLCT-LTHAATTEKQGFYCRCKADRVG 1373
>SB_1703| Best HMM Match : Extensin_2 (HMM E-Value=0.26)
Length = 307
Score = 28.3 bits (60), Expect = 4.8
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = +2
Query: 374 PLEYSPALSPTHRQHTHHLAKSDVEASEVHKSRHVSQLADWTTSSQDQPPLQARA 538
P++ + A SP ++H+ + + + +H S++ WT QD P ARA
Sbjct: 26 PVDSTRAESPRGQRHSK-IPPWTAPEQDPPRGQHQSRIPTWTAPQQDPPVDSARA 79
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +2
Query: 464 KSRHVSQLADWTTSSQDQPPLQARAAQGR 550
+ +H SQ+ WT QD P ARA R
Sbjct: 158 RGQHQSQIPTWTAPQQDPPVDSARARSPR 186
>SB_13699| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 402
Score = 27.9 bits (59), Expect = 6.3
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +2
Query: 380 EYSPALSP-THRQHTHHLAKSDVEASEVHKSRHV 478
+Y+P S THR T H + A VH +RHV
Sbjct: 159 QYTPRTSHRTHRMRTLHATYITLHAPYVHTTRHV 192
Score = 27.5 bits (58), Expect = 8.4
Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Frame = +2
Query: 380 EYSPALSP-THRQHTHHLAKSDVEASEVHKSRHVSQLADWTTSSQDQPPLQARAAQGR-V 553
+Y P S THR T H + A VH +RHV T +Q P R + R +
Sbjct: 116 QYMPRTSHRTHRMRTLHAMYITLHAPYVHTTRHVHHTTR-TVCAQYTPRTSHRTHRMRTL 174
Query: 554 HTT 562
H T
Sbjct: 175 HAT 177
>SB_58276| Best HMM Match : MIB_HERC2 (HMM E-Value=8.3e-33)
Length = 2822
Score = 27.9 bits (59), Expect = 6.3
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +2
Query: 254 PTGSSQPSTPNKSHSYNDYMISLQHKLASISNSGPVSPGSPLEYSP 391
PT SS STP ++ ++ +Q + ++ GS E SP
Sbjct: 1325 PTSSSSTSTPTTLNTVTSSLLMMQERPSTADQGASSDSGSSQEVSP 1370
>SB_42242| Best HMM Match : NapE (HMM E-Value=3.7)
Length = 361
Score = 27.9 bits (59), Expect = 6.3
Identities = 23/58 (39%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +1
Query: 259 GLVAAEHAQQESLVQRLHDLPATQVGLYIEQRSGVSRLSARVQSSVVANAS-TAHASF 429
G VAA A +SL Q LHD A V Y + S VS+ ++ VV + S A SF
Sbjct: 53 GHVAASTASNDSLEQSLHDSKA--VVRYAKGESQVSKYTSSSSPLVVEHPSFPARTSF 108
>SB_26663| Best HMM Match : Telo_bind (HMM E-Value=1.8e-17)
Length = 1086
Score = 27.9 bits (59), Expect = 6.3
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 2/91 (2%)
Frame = +2
Query: 257 TGSSQPSTPNKSHSYND--YMISLQHKLASISNSGPVSPGSPLEYSPALSPTHRQHTHHL 430
TG +P +S +++D M L+S + SGP +P L S + + +L
Sbjct: 427 TGVERPKGQEESINHSDPWQMSEDNEDLSSSACSGPATPSGTLTPSKFKAKSKSATEGNL 486
Query: 431 AKSDVEASEVHKSRHVSQLADWTTSSQDQPP 523
A D E S V S + + A +T+S P
Sbjct: 487 AGQD-ETSSVRTSSNAADDARISTTSSPVTP 516
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,145,959
Number of Sequences: 59808
Number of extensions: 354696
Number of successful extensions: 1185
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1035
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1180
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1385833362
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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