Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20711
         (578 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    30   0.019
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    26   0.23 
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              25   0.71 
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    25   0.71 
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        22   3.8  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   3.8  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    22   5.0  

>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 29.9 bits (64), Expect = 0.019
 Identities = 26/108 (24%), Positives = 42/108 (38%)
 Frame = +2

Query: 254 PTGSSQPSTPNKSHSYNDYMISLQHKLASISNSGPVSPGSPLEYSPALSPTHRQHTHHLA 433
           PT +  PSTP    S      ++ H+ + +   GP SP  PL  S      H QH H   
Sbjct: 126 PTPNGHPSTPIVYASCKLQAAAVDHQGSVLD--GPDSP--PLVESQMHHQMHTQHPHMQP 181

Query: 434 KSDVEASEVHKSRHVSQLADWTTSSQDQPPLQARAAQGRVHTTQRRGA 577
           +     S+  +    +         Q Q    ++ +Q  +H  Q++ A
Sbjct: 182 QQGQHQSQAQQQHLQAHEQHMMYQQQQQSQAASQQSQPGMHPRQQQQA 229


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 26.2 bits (55), Expect = 0.23
 Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
 Frame = +2

Query: 251 KPTGSSQPSTPNKSHSYNDYM-ISLQ----HKLASISNSGPVSPGSPLEYSPALSPTHRQ 415
           KP  ++   +P      +D M + ++      L++  +SG ++P SP  Y   +SP   +
Sbjct: 278 KPNSTTMNGSPGSGGIRSDQMGVKIEPAEAESLSTSGSSGILTPVSPYGYVKPISPEQEE 337

Query: 416 HTHHL 430
             H L
Sbjct: 338 LIHRL 342


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 24.6 bits (51), Expect = 0.71
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -3

Query: 456 SLASTSDLAK*CVCCR 409
           S+AST+  +K C CCR
Sbjct: 80  SVASTTGFSKECYCCR 95


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 24.6 bits (51), Expect = 0.71
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -3

Query: 456 SLASTSDLAK*CVCCR 409
           S+AST+  +K C CCR
Sbjct: 80  SVASTTGFSKECYCCR 95


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 19/73 (26%), Positives = 27/73 (36%)
 Frame = +2

Query: 323 QHKLASISNSGPVSPGSPLEYSPALSPTHRQHTHHLAKSDVEASEVHKSRHVSQLADWTT 502
           QH   S + S P   GS    SPA   T   + +    S   A   H+ +     A +  
Sbjct: 58  QHNSPSPTGSSPQHSGSSASTSPAARTTSSMYPY---VSAAAAHHHHQQQQAVAAAAFGA 114

Query: 503 SSQDQPPLQARAA 541
           +S   P   + AA
Sbjct: 115 TSSMVPGFGSTAA 127


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = +2

Query: 326 HKLASISNSGPVSPGSPLEYSPALSPTHRQHTHH 427
           H  +++  S   SPG     +  L P++  H HH
Sbjct: 289 HLSSALGRSACHSPGVYPSTAGFLPPSYHPHQHH 322


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 6/27 (22%), Positives = 16/27 (59%)
 Frame = +3

Query: 360 CLPALRSSTVQRCRQRIDSTRIIWLSL 440
           C P   +  +++C   +DS+ +I+ ++
Sbjct: 178 CFPRATNRDIKKCSYNMDSSYVIFSAM 204


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,222
Number of Sequences: 438
Number of extensions: 2783
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16748661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)