Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20711
         (578 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g24870.1 68416.m03119 expressed protein                             33   0.10 
At5g53870.1 68418.m06701 plastocyanin-like domain-containing pro...    33   0.14 
At3g12400.1 68416.m01545 tumour susceptibility gene 101 (TSG101)...    30   0.97 
At5g67300.1 68418.m08486 myb family transcription factor contain...    29   2.2  
At4g36520.1 68417.m05185 trichohyalin-related low similarity to ...    29   2.2  
At2g16900.1 68415.m01946 expressed protein                             29   2.2  
At2g42490.1 68415.m05256 copper amine oxidase, putative similar ...    28   3.9  
At5g60760.1 68418.m07623 2-phosphoglycerate kinase-related conta...    28   5.2  
At4g16670.1 68417.m02518 expressed protein                             28   5.2  
At3g42070.1 68416.m04317 hypothetical protein                          28   5.2  
At2g43340.1 68415.m05389 expressed protein                             28   5.2  
At5g16730.1 68418.m01959 expressed protein weak similarity to mi...    27   6.8  
At2g40040.1 68415.m04920 defective chloroplasts and leaves prote...    27   6.8  
At4g38550.1 68417.m05458 expressed protein                             27   9.0  

>At3g24870.1 68416.m03119 expressed protein
          Length = 1841

 Score = 33.5 bits (73), Expect = 0.10
 Identities = 26/104 (25%), Positives = 47/104 (45%), Gaps = 2/104 (1%)
 Frame = +2

Query: 260  GSSQPSTPNKSHSYNDYMISLQHKLASISNSGPVSPGSPLEYSPALSPTHRQH--THHLA 433
            G+  PS   +   ++D  I  Q   A+  N   +   S L  +PA++P++ QH   H   
Sbjct: 1611 GALSPSPQQQMQLHSDNSIQGQSSPATPCN---ILSTSSLSIAPAVAPSNHQHLLIHQKQ 1667

Query: 434  KSDVEASEVHKSRHVSQLADWTTSSQDQPPLQARAAQGRVHTTQ 565
            ++ V+++     +H + L +   S + Q     R  Q   +TTQ
Sbjct: 1668 RNQVQSTAQRVVQH-NHLGNSELSKKSQAECMPRVPQSVTNTTQ 1710


>At5g53870.1 68418.m06701 plastocyanin-like domain-containing
           protein contains similarity to SP|Q02917 Early nodulin
           55-2 precursor {Glycine max}; PF02298: Plastocyanin-like
           domain
          Length = 370

 Score = 33.1 bits (72), Expect = 0.14
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
 Frame = +2

Query: 254 PTGSSQPSTPNKSHSYNDYMISL------QHKLASISNSGPVSPGSPLEYSPALSPTH 409
           P  S  P+ P KSHS    +         Q   +S+S + P    SP+ ++PALSP+H
Sbjct: 141 PVPSVSPTQPPKSHSPVSPVAPASAPSKSQPPRSSVSPAQPPKSSSPISHTPALSPSH 198


>At3g12400.1 68416.m01545 tumour susceptibility gene 101 (TSG101)
           family protein contains Pfam profile PF05743: Tumour
           susceptibility gene 101 protein (TSG101); similar to
           Tumor susceptibility gene 101 protein
           (Swiss-Prot:Q99816) [Homo sapiens]
          Length = 398

 Score = 30.3 bits (65), Expect = 0.97
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +2

Query: 365 PGSPLEYSPALSPTHRQHTHHLAKSDVEASEVHKSRHVSQLADWTTS 505
           P  P  Y   +S    QH HH  +SD +A+EV K   ++++ +   S
Sbjct: 192 PFPPSPYGGGVSRVQVQHVHHQQQSD-DAAEVFKRNAINKMVEMVHS 237


>At5g67300.1 68418.m08486 myb family transcription factor contains
           PFAM profile: myb DNA binding domain PF00249
          Length = 305

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +2

Query: 5   SPASEHRPGPQLGAQPESNGAESYAQFGFSWAEL 106
           SP  EHRP     A+ +   A ++AQFG  WA +
Sbjct: 53  SPQVEHRP---FSAEEDETIARAHAQFGNKWATI 83


>At4g36520.1 68417.m05185 trichohyalin-related low similarity to
           SP|Q07283 Trichohyalin {Homo sapiens}
          Length = 1400

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +2

Query: 395 LSPTHRQHTHHLAKSDVEASEVHKSRHV 478
           LS  H++H + LA+   E  ++ KSRHV
Sbjct: 487 LSSRHKRHENKLAEKAPEEPKIEKSRHV 514


>At2g16900.1 68415.m01946 expressed protein
          Length = 382

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 18/48 (37%), Positives = 24/48 (50%)
 Frame = +2

Query: 317 SLQHKLASISNSGPVSPGSPLEYSPALSPTHRQHTHHLAKSDVEASEV 460
           S  HK    S + P+SP S  +    LSP  + H  H  K+D  ASE+
Sbjct: 120 SFNHKQEKPSRTVPLSPNSMADRGKPLSPRPQGH-EHSGKNDT-ASEI 165


>At2g42490.1 68415.m05256 copper amine oxidase, putative similar to
           copper methylamine oxidase precursor (MAOXII)
           [Arthrobacter sp.] SWISS-PROT:Q07123
          Length = 776

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +2

Query: 293 HSYNDYMISLQHKLASISNSGPVSPGSPLEYSPALSP 403
           H Y D  I  + KL  I + G + PG   +Y   ++P
Sbjct: 503 HFYQDGKIEAEVKLTGILSLGALQPGETRKYGTTIAP 539


>At5g60760.1 68418.m07623 2-phosphoglycerate kinase-related contains
           weak similarity to 2-phosphoglycerate kinase (GI:467751)
           [Methanothermus fervidus]
          Length = 738

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
 Frame = +2

Query: 362 SPGSPLEYSPALSPTHRQHTHHLAKSDVEA-SEVHKSRHVSQLA-DWTTSSQDQP 520
           S GS L  SP+LSP+H + +      D  A + V K+  V+ LA D    S+ +P
Sbjct: 68  SEGS-LILSPSLSPSHSKESEFQKTGDASACANVEKANKVNSLATDDVDKSKSKP 121


>At4g16670.1 68417.m02518 expressed protein 
          Length = 429

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
 Frame = +2

Query: 356 PVSPGSPLEY---SPALSPTHRQHTHHLAKSDVEASEVHKSRHVSQLADWTTSS--QDQP 520
           P +P  P+E+   S +LS +         KSD    +++K+ ++SQLAD T+ +     P
Sbjct: 58  PKTPREPMEFLCRSWSLSTSEISLALSSQKSD---KQLNKNPNISQLADVTSLAPVAPPP 114

Query: 521 PLQARAAQGRVH 556
           PLQ       VH
Sbjct: 115 PLQTGKLASAVH 126


>At3g42070.1 68416.m04317 hypothetical protein
          Length = 230

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
 Frame = +2

Query: 266 SQPSTPNKSHSYNDYMI----SLQHKLASISNSGPVSPGSPLEYSPAL 397
           S P  P + H +  Y++    S+ + +A++S  G V+P     +SPAL
Sbjct: 181 SPPPIPMEPHVFQKYVVDSFKSVWNAIATLSRCGCVAPTRRRRHSPAL 228


>At2g43340.1 68415.m05389 expressed protein
          Length = 189

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 19/58 (32%), Positives = 25/58 (43%)
 Frame = +2

Query: 365 PGSPLEYSPALSPTHRQHTHHLAKSDVEASEVHKSRHVSQLADWTTSSQDQPPLQARA 538
           P   L YS +     + H HH + S  + S V  S  VS +A W  SS    P   +A
Sbjct: 116 PALELCYSMSQKFIDQDHHHHSSSSPEKKSSVLDSP-VSPIASWKISSPGDNPDDVKA 172


>At5g16730.1 68418.m01959 expressed protein weak similarity to
           microtubule binding protein D-CLIP-190 [Drosophila
           melanogaster] GI:2773363, SMC2-like condensin
           [Arabidopsis thaliana] GI:14279543
          Length = 853

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 24/78 (30%), Positives = 32/78 (41%), Gaps = 10/78 (12%)
 Frame = +2

Query: 254 PTGSSQPSTP-------NKSHSYNDYMIS--LQHKLASISNSGPVSPGSPLEYSPAL-SP 403
           PTG S P+TP       NKS + N+   S    H   S+  S P S  S    SP L +P
Sbjct: 18  PTGKSSPATPRIAKRTVNKSETSNNNSPSTTTPHSRLSLDRSSPNSKSSVERRSPKLPTP 77

Query: 404 THRQHTHHLAKSDVEASE 457
             +      A    E+ +
Sbjct: 78  PEKSQARVAAVKGTESPQ 95


>At2g40040.1 68415.m04920 defective chloroplasts and leaves
            protein-related / DCL protein-related similar to DCL
            protein, chloroplast precursor (Defective chloroplasts
            and leaves protein) (Swiss-Prot:Q42463) [Lycopersicon
            esculentum]
          Length = 839

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 2/97 (2%)
 Frame = +2

Query: 254  PTGSSQPSTPNKSHSYNDYMISLQHKLASISNSGPVSPGSPLEYSPALSPTHRQ-HTHHL 430
            P G  Q   PN+S          Q +  S S +   SP      SP+ + +  Q  +   
Sbjct: 728  PPGEEQSQPPNQSIGNGGDDFQTQTQSQSPSQTRAQSPSQAQAQSPSQTQSQSQSQSQSQ 787

Query: 431  AKSDVEASEVHKSRHVSQLADWTTS-SQDQPPLQARA 538
            ++S  ++    +S+  SQ    + S +Q Q P Q +A
Sbjct: 788  SQSQSQSQSQSQSQSQSQSQSQSPSQTQTQSPSQTQA 824


>At4g38550.1 68417.m05458 expressed protein
          Length = 612

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 15/54 (27%), Positives = 22/54 (40%)
 Frame = +2

Query: 254 PTGSSQPSTPNKSHSYNDYMISLQHKLASISNSGPVSPGSPLEYSPALSPTHRQ 415
           P G+  P  P KS  Y        ++  + SN+ P  P      SP  +P  R+
Sbjct: 120 PAGNRTPERPRKSTEYRREHQDRMYEADTRSNASPFHPFRSPSPSPFHTPDRRR 173


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,159,554
Number of Sequences: 28952
Number of extensions: 228043
Number of successful extensions: 751
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1131744440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)