Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20710
(662 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein S8|Schizosaccha... 128 7e-31
SPAC521.05 |rps802|rps8-2|40S ribosomal protein S8|Schizosacchar... 128 7e-31
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki... 28 1.0
SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr 2|... 28 1.4
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph... 26 4.2
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc... 26 5.6
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom... 26 5.6
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 25 7.4
SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces ... 25 9.7
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ... 25 9.7
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 25 9.7
>SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein
S8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 200
Score = 128 bits (309), Expect = 7e-31
Identities = 59/83 (71%), Positives = 68/83 (81%)
Frame = +3
Query: 6 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 185
MGI+RD HKR ATG KRA RKKRK+ELGR +NTR+GP+RIH VR RGGN K+RALRL
Sbjct: 1 MGITRDSRHKRSATGAKRAQYRKKRKFELGRQPSNTRIGPKRIHEVRVRGGNKKFRALRL 60
Query: 186 DTGNFSWGSECSTRKTRIIDVVY 254
D+GNFSWGSE ++KTRII V Y
Sbjct: 61 DSGNFSWGSEGVSKKTRIIQVAY 83
Score = 76.6 bits (180), Expect = 3e-15
Identities = 42/86 (48%), Positives = 53/86 (61%)
Frame = +2
Query: 254 YASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQ 433
+ SNNELVRT TL K+AIV +DA PFR WYE+HY + +G KG K T +S+
Sbjct: 84 HPSNNELVRTNTLTKSAIVQIDAAPFRVWYETHYGILMG-SKGKKATSTP-----NPKSK 137
Query: 434 KTARKYLARQRLAKVEGALEEQFHTG 511
RK+ AR +KV+ ALE QF G
Sbjct: 138 HVQRKHSARLGDSKVDSALETQFAAG 163
Score = 59.3 bits (137), Expect = 5e-10
Identities = 26/38 (68%), Positives = 31/38 (81%)
Frame = +1
Query: 508 GRLLACVASRPGQCGRADGYILEGKELEFYLRKIKSKR 621
GRL A V+SRPGQ GR DGYILEG+EL FYLR++ K+
Sbjct: 163 GRLYAVVSSRPGQSGRCDGYILEGEELHFYLRRMAPKK 200
>SPAC521.05 |rps802|rps8-2|40S ribosomal protein
S8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 200
Score = 128 bits (309), Expect = 7e-31
Identities = 59/83 (71%), Positives = 68/83 (81%)
Frame = +3
Query: 6 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 185
MGI+RD HKR ATG KRA RKKRK+ELGR +NTR+GP+RIH VR RGGN K+RALRL
Sbjct: 1 MGITRDSRHKRSATGAKRAQYRKKRKFELGRQPSNTRIGPKRIHEVRVRGGNKKFRALRL 60
Query: 186 DTGNFSWGSECSTRKTRIIDVVY 254
D+GNFSWGSE ++KTRII V Y
Sbjct: 61 DSGNFSWGSEGVSKKTRIIQVAY 83
Score = 75.8 bits (178), Expect = 5e-15
Identities = 42/86 (48%), Positives = 53/86 (61%)
Frame = +2
Query: 254 YASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQ 433
+ SNNELVRT TL K+AIV +DA PFR WYE+HY + +G KG K T +S+
Sbjct: 84 HPSNNELVRTNTLTKSAIVQIDAAPFRVWYETHYGILMG-SKGKKATATP-----TPKSK 137
Query: 434 KTARKYLARQRLAKVEGALEEQFHTG 511
RK+ AR +KV+ ALE QF G
Sbjct: 138 HVQRKHSARLGDSKVDSALETQFAAG 163
Score = 59.3 bits (137), Expect = 5e-10
Identities = 26/38 (68%), Positives = 31/38 (81%)
Frame = +1
Query: 508 GRLLACVASRPGQCGRADGYILEGKELEFYLRKIKSKR 621
GRL A V+SRPGQ GR DGYILEG+EL FYLR++ K+
Sbjct: 163 GRLYAVVSSRPGQSGRCDGYILEGEELHFYLRRMAPKK 200
>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase kinase
Win1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1436
Score = 28.3 bits (60), Expect = 1.0
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
Frame = +3
Query: 18 RDHWHKRRATGGKRAPIRKKRKY--ELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDT 191
RD +K + G K+ + EL +N + Q+ + S T YRA+ LDT
Sbjct: 1083 RDRLYKSQLIGRVLDDTTKENRLLKELASSKSNITIRWQQGGLIGSGSFGTVYRAVNLDT 1142
Query: 192 GNFSWGSECSTRKTRI 239
G+ E + K RI
Sbjct: 1143 GDLMAVKEVALHKPRI 1158
>SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr
2|||Manual
Length = 207
Score = 27.9 bits (59), Expect = 1.4
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = +3
Query: 21 DHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALR 182
+ W K T K+ +KRK L R A RL + + S+ S+GG +A +
Sbjct: 32 EKWSKGVKTN-KKEQEAEKRKAALERKAERERLEKEEMESLPSKGGKGSKKAAK 84
>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
Phf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 538
Score = 26.2 bits (55), Expect = 4.2
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -2
Query: 274 QFIVRCIYTTSMIRVLRVEHSDPQEKLPVSRR 179
QF + + T S +V R H DP KLP RR
Sbjct: 190 QFNLEGVKTKSGRKVHRPNHFDPLVKLPTRRR 221
>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
Prp43|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 25.8 bits (54), Expect = 5.6
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -3
Query: 342 YHCLNGVASTTTIAFLTRVFVRTNS 268
++C N V S T + + VFVR NS
Sbjct: 518 FYCSNEVLSLTALLSVPNVFVRPNS 542
>SPCC132.01c ||SPCC1322.17c|DUF814 family
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1021
Score = 25.8 bits (54), Expect = 5.6
Identities = 14/59 (23%), Positives = 28/59 (47%)
Frame = +2
Query: 320 ATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEE 496
+TP + H KKG+K+ A++ ++R + AR+ A + K ++E+
Sbjct: 754 STPDTTGSDIHIVSEKRGKKGSKVITAKKVSAKERREARRARRQTALEESLKAPISIED 812
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 25.4 bits (53), Expect = 7.4
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -3
Query: 558 GATTLTWATRHASQQTPVWNCSSRAPS 478
G+ T W ++ +TP WN SR P+
Sbjct: 851 GSRTPAW---NSGNKTPAWNAGSRTPA 874
Score = 25.0 bits (52), Expect = 9.7
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -3
Query: 558 GATTLTWATRHASQQTPVWNCSSRAPS 478
G+ T W ++ +TP WN SR P+
Sbjct: 833 GSRTPAW---NSGSKTPAWNSGSRTPA 856
>SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 655
Score = 25.0 bits (52), Expect = 9.7
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -2
Query: 598 DRTRVLCLLRCNHRRDHTDLGDSPRKPAN 512
D + CLLR H+RD + + RK N
Sbjct: 434 DANIIPCLLRSKHKRDKANPENKERKLVN 462
>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1894
Score = 25.0 bits (52), Expect = 9.7
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +1
Query: 112 PGSVLSVSTPFVHVVEILSTVRCVWTPVTSLG 207
P VLS P++ + L + C+W P LG
Sbjct: 682 PILVLSTMKPYLCNITFLGSHLCIWQPKILLG 713
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 25.0 bits (52), Expect = 9.7
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = +3
Query: 21 DHWHKRRATGGKRAPIRKKRKYE 89
D W +A G +PIR+ ++Y+
Sbjct: 758 DEWKASKAFGANDSPIRENKRYK 780
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,592,111
Number of Sequences: 5004
Number of extensions: 51636
Number of successful extensions: 151
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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