Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20710
(662 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0270 + 17135464-17135467,17135583-17135655,17136253-171365... 125 4e-29
04_03_0510 - 16659486-16659564,16659772-16659947,16660464-166607... 124 5e-29
07_01_0467 - 3524598-3524837,3524939-3525466,3526242-3526892,352... 33 0.27
11_01_0551 + 4361640-4363386,4363443-4363687 31 0.82
11_06_0744 - 26850761-26850771,26850794-26850861,26851464-26851861 29 2.5
06_03_0451 - 20925100-20926734 29 4.4
12_02_0398 - 18586985-18587480,18587669-18587687,18588317-185885... 28 7.6
04_04_0799 + 28143878-28145042,28145127-28145290,28146008-281460... 28 7.6
>02_03_0270 +
17135464-17135467,17135583-17135655,17136253-17136583,
17136916-17136969,17137219-17137394,17137607-17137685
Length = 238
Score = 125 bits (301), Expect = 4e-29
Identities = 60/84 (71%), Positives = 67/84 (79%), Gaps = 1/84 (1%)
Frame = +3
Query: 6 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALR 182
MGISRD HKRRATGGK+ RKKRKYELGR ANT+L + + VR RGGN K+RALR
Sbjct: 1 MGISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALR 60
Query: 183 LDTGNFSWGSECSTRKTRIIDVVY 254
LDTGN+SWGSE TRKTRI+DVVY
Sbjct: 61 LDTGNYSWGSEAVTRKTRILDVVY 84
Score = 76.6 bits (180), Expect = 2e-14
Identities = 31/40 (77%), Positives = 38/40 (95%)
Frame = +1
Query: 508 GRLLACVASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 627
GRLLAC++SRPGQCGRADGYILEGKELEFY++K++ K+ K
Sbjct: 195 GRLLACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGK 234
Score = 69.7 bits (163), Expect = 2e-12
Identities = 34/54 (62%), Positives = 42/54 (77%), Gaps = 2/54 (3%)
Frame = +2
Query: 257 ASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLT--EAEEAI 412
ASNNELVRT+TLVK+AIV VDA PF+QWY +HY + +GRKK A +AE A+
Sbjct: 86 ASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGVDIGRKKKAPAAKKDAEHAL 139
>04_03_0510 -
16659486-16659564,16659772-16659947,16660464-16660797,
16661564-16661636,16661780-16661783
Length = 221
Score = 124 bits (300), Expect = 5e-29
Identities = 60/84 (71%), Positives = 67/84 (79%), Gaps = 1/84 (1%)
Frame = +3
Query: 6 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALR 182
MGISRD HKRRATGGK+ RKKRKYELGR ANT+L + + VR RGGN K+RALR
Sbjct: 1 MGISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNLKWRALR 60
Query: 183 LDTGNFSWGSECSTRKTRIIDVVY 254
LDTGN+SWGSE TRKTRI+DVVY
Sbjct: 61 LDTGNYSWGSEAVTRKTRILDVVY 84
Score = 82.2 bits (194), Expect = 3e-16
Identities = 45/93 (48%), Positives = 58/93 (62%), Gaps = 8/93 (8%)
Frame = +2
Query: 257 ASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKK--------GAKLTEAEEAI 412
ASNNELVRT+TLVK+AIV VDA PF+QWY +HY + +GRKK A+ E E A
Sbjct: 86 ASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGVDIGRKKKAPAAKKDAAEGQEGEAAT 145
Query: 413 INKKRSQKTARKYLARQRLAKVEGALEEQFHTG 511
K+S RK RQ+ ++ +EEQF +G
Sbjct: 146 EEAKKSNHVVRKLEKRQQTRTLDSHIEEQFGSG 178
Score = 76.6 bits (180), Expect = 2e-14
Identities = 31/40 (77%), Positives = 38/40 (95%)
Frame = +1
Query: 508 GRLLACVASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 627
GRLLAC++SRPGQCGRADGYILEGKELEFY++K++ K+ K
Sbjct: 178 GRLLACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGK 217
>07_01_0467 -
3524598-3524837,3524939-3525466,3526242-3526892,
3527015-3527500,3527580-3527792,3527885-3528174,
3528276-3528418,3528633-3528855,3528983-3529160,
3529598-3529867
Length = 1073
Score = 32.7 bits (71), Expect = 0.27
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 5/50 (10%)
Frame = +3
Query: 78 RKYELGRPAANTRLGPQRIHSVRSR----GGNTKYRALRLDTGN-FSWGS 212
R+ +LG P+ +T+ P+R+ S+++R K+ A DTG F+WGS
Sbjct: 271 REGQLGYPSVDTQPTPRRVSSLKARIISVAAANKHSAAVADTGEVFTWGS 320
>11_01_0551 + 4361640-4363386,4363443-4363687
Length = 663
Score = 31.1 bits (67), Expect = 0.82
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = +2
Query: 374 KKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQ-FHTGVCWLAWRVAQVSV 550
+ G+ T+A E+I KK+ + +K + + A V A EE+ G L WR+ S
Sbjct: 289 QNGSFTTQAAESIKEKKKRAEKKKKKKKKVKAASVAAAAEEEGGGGGAASLGWRLCNTSA 348
Query: 551 VAPMV 565
A +
Sbjct: 349 GADYI 353
>11_06_0744 - 26850761-26850771,26850794-26850861,26851464-26851861
Length = 158
Score = 29.5 bits (63), Expect = 2.5
Identities = 22/53 (41%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Frame = +3
Query: 33 KRRATGGKRAPIRKKRKYELGRPAA---NTRLGPQRIHSVRSRGGNTKYRALR 182
KRR GG+RA R+K + E GR A R G R R RGG + R R
Sbjct: 81 KRRRGGGRRAAGRRKEEEEAGRRKAGEETRRRGAGR--RKRRRGGRRRRRRRR 131
Score = 29.1 bits (62), Expect = 3.3
Identities = 17/45 (37%), Positives = 21/45 (46%)
Frame = +3
Query: 33 KRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTK 167
KRR GG+RA R+K + E GR A R RGG +
Sbjct: 45 KRRRGGGRRAAGRRKEEEEAGRRKAGEEARRGAGKRKRRRGGGRR 89
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +3
Query: 33 KRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTK 167
+RR GG+RA R+K + E GR A R RGG +
Sbjct: 9 RRRRGGGRRAAGRRKEEEEAGRRKAGEEARRGAGKRKRRRGGGRR 53
>06_03_0451 - 20925100-20926734
Length = 544
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -2
Query: 517 ANARVELLF*STLNLSKTLPCQVFSCCLLTSLLVDN 410
AN + ++ S N S+ LP + C LL L++DN
Sbjct: 387 ANGELYGIYASNNNFSRNLPANLGDCVLLQELVLDN 422
>12_02_0398 -
18586985-18587480,18587669-18587687,18588317-18588544,
18589699-18589966
Length = 336
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = +3
Query: 18 RDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHS 140
R H T G+ P + Y LG P A +GP +H+
Sbjct: 210 RPETHTFHLTVGEMVPTLQDVSYLLGLPIAGAAVGPTMVHA 250
>04_04_0799 +
28143878-28145042,28145127-28145290,28146008-28146070,
28146268-28146491,28146850-28147555
Length = 773
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +2
Query: 377 KGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHT 508
KG+KL + E + + R++ A R LA GAL + H+
Sbjct: 4 KGSKLEDQEAVALCRGRAELLAAAVRHRYALADAHGALADSLHS 47
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,789,476
Number of Sequences: 37544
Number of extensions: 372899
Number of successful extensions: 1059
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1013
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1056
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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