Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20710
         (662 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39807| Best HMM Match : Ribosomal_S8e (HMM E-Value=0)              116   1e-26
SB_22712| Best HMM Match : Ribosomal_S8e (HMM E-Value=0.068)           31   0.84 
SB_17079| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_810| Best HMM Match : TAF4 (HMM E-Value=4.7e-31)                    29   2.6  
SB_38738| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_23539| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.8  

>SB_39807| Best HMM Match : Ribosomal_S8e (HMM E-Value=0)
          Length = 192

 Score =  116 bits (280), Expect = 1e-26
 Identities = 56/85 (65%), Positives = 65/85 (76%)
 Frame = +2

Query: 257 ASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQK 436
           ASNNELVRTKTLVKN IV VD+TPFRQWYE+HY +P+GRKK  + TE E+ I+NKKRS  
Sbjct: 69  ASNNELVRTKTLVKNCIVQVDSTPFRQWYEAHYAIPIGRKKTKQPTEEEQEILNKKRSNH 128

Query: 437 TARKYLARQRLAKVEGALEEQFHTG 511
             RK  AR+  AKV   +EEQF TG
Sbjct: 129 CTRKLEARKANAKVAPGMEEQFVTG 153



 Score =  106 bits (255), Expect = 1e-23
 Identities = 47/64 (73%), Positives = 54/64 (84%)
 Frame = +3

Query: 63  PIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRII 242
           P+R KRK+ELGRP ANT++G +RIH VR+RGGN K+RA RLDT NFSWGSE  TRK RII
Sbjct: 4   PLRHKRKFELGRPPANTKIGTKRIHEVRTRGGNRKFRAFRLDTENFSWGSESCTRKARII 63

Query: 243 DVVY 254
           DVVY
Sbjct: 64  DVVY 67



 Score = 72.1 bits (169), Expect = 4e-13
 Identities = 30/40 (75%), Positives = 37/40 (92%)
 Frame = +1

Query: 508 GRLLACVASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 627
           GRL ACV+SRPGQ GR DGYILEGKELEFY++K+K+++AK
Sbjct: 153 GRLYACVSSRPGQSGRCDGYILEGKELEFYIKKLKARKAK 192


>SB_22712| Best HMM Match : Ribosomal_S8e (HMM E-Value=0.068)
          Length = 147

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 260 SNNELVRTKTLVKNAIVVVDATPFRQWYESH 352
           +N E +    +VK +IV VD  PF  W++ +
Sbjct: 83  ANKEHIERNVIVKGSIVQVDNKPFEDWFQEY 113



 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/44 (29%), Positives = 28/44 (63%)
 Frame = +3

Query: 123 PQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVY 254
           P++I   ++ GG+TK +ALR++ G ++  S+    +  I+ V++
Sbjct: 37  PEKIKERKAYGGHTKIKALRVNKGVYTLKSQGVEVEAPILSVMH 80


>SB_17079| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2537

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 39  RATGGKRAPIRKKRKYELGRPAANTRLGP 125
           R  GG R P+++   +E  +P+ N R GP
Sbjct: 769 RRGGGSRVPVKRSSSFENRKPSPNRRRGP 797


>SB_810| Best HMM Match : TAF4 (HMM E-Value=4.7e-31)
          Length = 883

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +2

Query: 377 KGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALE 493
           + AKL + EE II K+ +  TA   +  ++  K++ ALE
Sbjct: 701 RAAKLQQEEEEIIRKREANNTALAAIGPRKKRKLDEALE 739


>SB_38738| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 210

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 419 KKRSQKTARKYLARQRLAKVEGALEE 496
           K+R QK  + Y  RQR  ++  +LEE
Sbjct: 15  KRRKQKATKSYAERQRRTRINKSLEE 40


>SB_23539| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1041

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 4/96 (4%)
 Frame = +3

Query: 24  HWHKRRATGGKRAP-IRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKY-RALRLDTGN 197
           H  K R T GK     R+K +  LG+ + NTR   ++     +     KY + L  +T N
Sbjct: 190 HSAKIRQTLGKNTTNTRQKTRQTLGKSSTNTRQKTRQTLGKNTTNTRQKYDKPLGKNTTN 249

Query: 198 FSWGSECSTRKTRIIDVV--YMHLTMNWCVQRPLSR 299
                  +   T+++D +  Y+H +  + +    SR
Sbjct: 250 TRQXXXXANNWTKLVDEMDDYLHSSRKFTMLSDASR 285


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,243,754
Number of Sequences: 59808
Number of extensions: 421464
Number of successful extensions: 1090
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1015
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1089
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)