Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20710
(662 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X67247-1|CAA47670.1| 208|Homo sapiens ribosomal protein S8 prot... 158 1e-38
BC070875-1|AAH70875.1| 208|Homo sapiens ribosomal protein S8 pr... 158 1e-38
AL592166-7|CAI13003.1| 208|Homo sapiens ribosomal protein S8 pr... 158 1e-38
AB062401-1|BAB93488.1| 208|Homo sapiens ribosomal protein S8 pr... 158 1e-38
AL592166-8|CAI13002.1| 188|Homo sapiens ribosomal protein S8 pr... 130 3e-30
BC005678-1|AAH05678.1| 80|Homo sapiens Similar to ribosomal pr... 80 6e-15
AF061324-1|AAC16058.1| 1549|Homo sapiens sulfonylurea receptor 2... 31 4.9
AF061323-1|AAC16057.1| 1549|Homo sapiens sulfonylurea receptor 2... 31 4.9
CR457284-1|CAG33565.1| 201|Homo sapiens FLJ11749 protein. 30 8.5
BC010108-1|AAH10108.1| 201|Homo sapiens chromatin modifying pro... 30 8.5
AY329087-1|AAQ91196.1| 201|Homo sapiens VPS20 protein. 30 8.5
AK021811-1|BAB13901.1| 201|Homo sapiens protein ( Homo sapiens ... 30 8.5
>X67247-1|CAA47670.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 158 bits (384), Expect = 1e-38
Identities = 70/83 (84%), Positives = 75/83 (90%)
Frame = +3
Query: 6 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 185
MGISRD+WHKRR TGGKR P KKRKYELGRPAANT++GP+RIH+VR RGGN KYRALRL
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 60
Query: 186 DTGNFSWGSECSTRKTRIIDVVY 254
D GNFSWGSEC TRKTRIIDVVY
Sbjct: 61 DVGNFSWGSECCTRKTRIIDVVY 83
Score = 130 bits (315), Expect = 3e-30
Identities = 60/85 (70%), Positives = 70/85 (82%)
Frame = +2
Query: 257 ASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQK 436
ASNNELVRTKTLVKN IV++D+TP+RQWYESHY LPLGRKKGAKLT EE I+NKKRS+K
Sbjct: 85 ASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEEEILNKKRSKK 144
Query: 437 TARKYLARQRLAKVEGALEEQFHTG 511
+KY R++ AK+ LEEQF G
Sbjct: 145 IQKKYDERKKNAKISSLLEEQFQQG 169
Score = 80.2 bits (189), Expect = 6e-15
Identities = 33/40 (82%), Positives = 39/40 (97%)
Frame = +1
Query: 508 GRLLACVASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 627
G+LLAC+ASRPGQCGRADGY+LEGKELEFYLRKIK+++ K
Sbjct: 169 GKLLACIASRPGQCGRADGYVLEGKELEFYLRKIKARKGK 208
>BC070875-1|AAH70875.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 158 bits (384), Expect = 1e-38
Identities = 70/83 (84%), Positives = 75/83 (90%)
Frame = +3
Query: 6 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 185
MGISRD+WHKRR TGGKR P KKRKYELGRPAANT++GP+RIH+VR RGGN KYRALRL
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 60
Query: 186 DTGNFSWGSECSTRKTRIIDVVY 254
D GNFSWGSEC TRKTRIIDVVY
Sbjct: 61 DVGNFSWGSECCTRKTRIIDVVY 83
Score = 130 bits (315), Expect = 3e-30
Identities = 60/85 (70%), Positives = 70/85 (82%)
Frame = +2
Query: 257 ASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQK 436
ASNNELVRTKTLVKN IV++D+TP+RQWYESHY LPLGRKKGAKLT EE I+NKKRS+K
Sbjct: 85 ASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEEEILNKKRSKK 144
Query: 437 TARKYLARQRLAKVEGALEEQFHTG 511
+KY R++ AK+ LEEQF G
Sbjct: 145 IQKKYDERKKNAKISSLLEEQFQQG 169
Score = 80.2 bits (189), Expect = 6e-15
Identities = 33/40 (82%), Positives = 39/40 (97%)
Frame = +1
Query: 508 GRLLACVASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 627
G+LLAC+ASRPGQCGRADGY+LEGKELEFYLRKIK+++ K
Sbjct: 169 GKLLACIASRPGQCGRADGYVLEGKELEFYLRKIKARKGK 208
>AL592166-7|CAI13003.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 158 bits (384), Expect = 1e-38
Identities = 70/83 (84%), Positives = 75/83 (90%)
Frame = +3
Query: 6 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 185
MGISRD+WHKRR TGGKR P KKRKYELGRPAANT++GP+RIH+VR RGGN KYRALRL
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 60
Query: 186 DTGNFSWGSECSTRKTRIIDVVY 254
D GNFSWGSEC TRKTRIIDVVY
Sbjct: 61 DVGNFSWGSECCTRKTRIIDVVY 83
Score = 130 bits (315), Expect = 3e-30
Identities = 60/85 (70%), Positives = 70/85 (82%)
Frame = +2
Query: 257 ASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQK 436
ASNNELVRTKTLVKN IV++D+TP+RQWYESHY LPLGRKKGAKLT EE I+NKKRS+K
Sbjct: 85 ASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEEEILNKKRSKK 144
Query: 437 TARKYLARQRLAKVEGALEEQFHTG 511
+KY R++ AK+ LEEQF G
Sbjct: 145 IQKKYDERKKNAKISSLLEEQFQQG 169
Score = 80.2 bits (189), Expect = 6e-15
Identities = 33/40 (82%), Positives = 39/40 (97%)
Frame = +1
Query: 508 GRLLACVASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 627
G+LLAC+ASRPGQCGRADGY+LEGKELEFYLRKIK+++ K
Sbjct: 169 GKLLACIASRPGQCGRADGYVLEGKELEFYLRKIKARKGK 208
>AB062401-1|BAB93488.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 158 bits (384), Expect = 1e-38
Identities = 70/83 (84%), Positives = 75/83 (90%)
Frame = +3
Query: 6 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 185
MGISRD+WHKRR TGGKR P KKRKYELGRPAANT++GP+RIH+VR RGGN KYRALRL
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 60
Query: 186 DTGNFSWGSECSTRKTRIIDVVY 254
D GNFSWGSEC TRKTRIIDVVY
Sbjct: 61 DVGNFSWGSECCTRKTRIIDVVY 83
Score = 130 bits (315), Expect = 3e-30
Identities = 60/85 (70%), Positives = 70/85 (82%)
Frame = +2
Query: 257 ASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQK 436
ASNNELVRTKTLVKN IV++D+TP+RQWYESHY LPLGRKKGAKLT EE I+NKKRS+K
Sbjct: 85 ASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEEEILNKKRSKK 144
Query: 437 TARKYLARQRLAKVEGALEEQFHTG 511
+KY R++ AK+ LEEQF G
Sbjct: 145 IQKKYDERKKNAKISSLLEEQFQQG 169
Score = 80.2 bits (189), Expect = 6e-15
Identities = 33/40 (82%), Positives = 39/40 (97%)
Frame = +1
Query: 508 GRLLACVASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 627
G+LLAC+ASRPGQCGRADGY+LEGKELEFYLRKIK+++ K
Sbjct: 169 GKLLACIASRPGQCGRADGYVLEGKELEFYLRKIKARKGK 208
>AL592166-8|CAI13002.1| 188|Homo sapiens ribosomal protein S8
protein.
Length = 188
Score = 130 bits (315), Expect = 3e-30
Identities = 60/85 (70%), Positives = 70/85 (82%)
Frame = +2
Query: 257 ASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQK 436
ASNNELVRTKTLVKN IV++D+TP+RQWYESHY LPLGRKKGAKLT EE I+NKKRS+K
Sbjct: 65 ASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEEEILNKKRSKK 124
Query: 437 TARKYLARQRLAKVEGALEEQFHTG 511
+KY R++ AK+ LEEQF G
Sbjct: 125 IQKKYDERKKNAKISSLLEEQFQQG 149
Score = 98.3 bits (234), Expect = 2e-20
Identities = 53/83 (63%), Positives = 58/83 (69%)
Frame = +3
Query: 6 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 185
MGISRD+WHKRR TGGKR P KKRKYELGRPAANT++GP+RIH+VR RGG
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGG--------- 51
Query: 186 DTGNFSWGSECSTRKTRIIDVVY 254
C TRKTRIIDVVY
Sbjct: 52 ----------C-TRKTRIIDVVY 63
Score = 80.2 bits (189), Expect = 6e-15
Identities = 33/40 (82%), Positives = 39/40 (97%)
Frame = +1
Query: 508 GRLLACVASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 627
G+LLAC+ASRPGQCGRADGY+LEGKELEFYLRKIK+++ K
Sbjct: 149 GKLLACIASRPGQCGRADGYVLEGKELEFYLRKIKARKGK 188
>BC005678-1|AAH05678.1| 80|Homo sapiens Similar to ribosomal
protein S8 protein.
Length = 80
Score = 80.2 bits (189), Expect = 6e-15
Identities = 33/40 (82%), Positives = 39/40 (97%)
Frame = +1
Query: 508 GRLLACVASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 627
G+LLAC+ASRPGQCGRADGY+LEGKELEFYLRKIK+++ K
Sbjct: 41 GKLLACIASRPGQCGRADGYVLEGKELEFYLRKIKARKGK 80
Score = 46.8 bits (106), Expect = 7e-05
Identities = 22/41 (53%), Positives = 28/41 (68%)
Frame = +2
Query: 389 LTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHTG 511
LT EE I+NKKRS+K +KY R++ AK+ LEEQF G
Sbjct: 1 LTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQG 41
>AF061324-1|AAC16058.1| 1549|Homo sapiens sulfonylurea receptor 2B
protein.
Length = 1549
Score = 30.7 bits (66), Expect = 4.9
Identities = 27/93 (29%), Positives = 37/93 (39%), Gaps = 7/93 (7%)
Frame = +3
Query: 12 ISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIH-------SVRSRGGNTKY 170
I D W TG P +K+ +P R P R H + R R T+
Sbjct: 614 IGDDSWR----TGESSLPFESCKKHTGVQPKTINRKQPGRYHLDSYEQSTRRLRPAETED 669
Query: 171 RALRLDTGNFSWGSECSTRKTRIIDVVYMHLTM 269
A+++ G FSWGS +T I + LTM
Sbjct: 670 IAIKVTNGYFSWGSGLATLSNIDIRIPTGQLTM 702
>AF061323-1|AAC16057.1| 1549|Homo sapiens sulfonylurea receptor 2A
protein.
Length = 1549
Score = 30.7 bits (66), Expect = 4.9
Identities = 27/93 (29%), Positives = 37/93 (39%), Gaps = 7/93 (7%)
Frame = +3
Query: 12 ISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIH-------SVRSRGGNTKY 170
I D W TG P +K+ +P R P R H + R R T+
Sbjct: 614 IGDDSWR----TGESSLPFESCKKHTGVQPKTINRKQPGRYHLDSYEQSTRRLRPAETED 669
Query: 171 RALRLDTGNFSWGSECSTRKTRIIDVVYMHLTM 269
A+++ G FSWGS +T I + LTM
Sbjct: 670 IAIKVTNGYFSWGSGLATLSNIDIRIPTGQLTM 702
>CR457284-1|CAG33565.1| 201|Homo sapiens FLJ11749 protein.
Length = 201
Score = 29.9 bits (64), Expect = 8.5
Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Frame = +2
Query: 368 GRKKGAKLTEAEEAIINKKRSQKTARKYLAR--QRLAKVEGALEEQ 499
GRKK +++TE ++AI+ K+ + R+Y R Q+L + E AL Q
Sbjct: 6 GRKKQSRVTEQDKAILQLKQQRDKLRQYQKRIAQQLER-ERALARQ 50
>BC010108-1|AAH10108.1| 201|Homo sapiens chromatin modifying
protein 6 protein.
Length = 201
Score = 29.9 bits (64), Expect = 8.5
Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Frame = +2
Query: 368 GRKKGAKLTEAEEAIINKKRSQKTARKYLAR--QRLAKVEGALEEQ 499
GRKK +++TE ++AI+ K+ + R+Y R Q+L + E AL Q
Sbjct: 6 GRKKQSRVTEQDKAILQLKQQRDKLRQYQKRIAQQLER-ERALARQ 50
>AY329087-1|AAQ91196.1| 201|Homo sapiens VPS20 protein.
Length = 201
Score = 29.9 bits (64), Expect = 8.5
Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Frame = +2
Query: 368 GRKKGAKLTEAEEAIINKKRSQKTARKYLAR--QRLAKVEGALEEQ 499
GRKK +++TE ++AI+ K+ + R+Y R Q+L + E AL Q
Sbjct: 6 GRKKQSRVTEQDKAILQLKQQRDKLRQYQKRIAQQLER-ERALARQ 50
>AK021811-1|BAB13901.1| 201|Homo sapiens protein ( Homo sapiens
cDNA FLJ11749 fis, clone HEMBA1005558, weakly similar to
NUCLEAR PROTEIN SNF7. ).
Length = 201
Score = 29.9 bits (64), Expect = 8.5
Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Frame = +2
Query: 368 GRKKGAKLTEAEEAIINKKRSQKTARKYLAR--QRLAKVEGALEEQ 499
GRKK +++TE ++AI+ K+ + R+Y R Q+L + E AL Q
Sbjct: 6 GRKKQSRVTEQDKAILQLKQQRDKLRQYQKRIAQQLER-ERALARQ 50
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,034,789
Number of Sequences: 237096
Number of extensions: 2038450
Number of successful extensions: 4622
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4622
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7478817430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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