Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20710
         (662 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40799-7|AAA81485.1|  208|Caenorhabditis elegans Ribosomal prote...   126   2e-29
Z93396-3|CAB07712.1|  597|Caenorhabditis elegans Hypothetical pr...    29   2.9  
U88315-4|AAB42369.3|  778|Caenorhabditis elegans Hypothetical pr...    28   6.8  
AL132864-3|CAE46684.2|  103|Caenorhabditis elegans Hypothetical ...    28   6.8  
AF067216-10|AAC17519.1|  492|Caenorhabditis elegans Hypothetical...    28   6.8  
Z73424-3|CAA97781.2| 1150|Caenorhabditis elegans Hypothetical pr...    27   9.0  

>U40799-7|AAA81485.1|  208|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 8 protein.
          Length = 208

 Score =  126 bits (303), Expect = 2e-29
 Identities = 56/83 (67%), Positives = 66/83 (79%)
 Frame = +3

Query: 6   MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 185
           MGISRD WHKR  TG  +    KKRK+ELGRPAANT++G  R+  VR+RGGN KYRALRL
Sbjct: 1   MGISRDSWHKRYKTGATQPVPHKKRKFELGRPAANTKIGAHRVRLVRTRGGNEKYRALRL 60

Query: 186 DTGNFSWGSECSTRKTRIIDVVY 254
           D+GNFSW SE +TRKTRI+D +Y
Sbjct: 61  DSGNFSWASEQTTRKTRIVDTMY 83



 Score =  123 bits (296), Expect = 1e-28
 Identities = 57/85 (67%), Positives = 67/85 (78%)
 Frame = +2

Query: 257 ASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQK 436
           A+NNELVRTKTLVK AI+ VDA PFRQWYE+HY LPL RKK AKL+E + AI+NKKRS  
Sbjct: 85  ATNNELVRTKTLVKGAIISVDAAPFRQWYEAHYALPLARKKNAKLSEEDNAILNKKRSHH 144

Query: 437 TARKYLARQRLAKVEGALEEQFHTG 511
           T +KY  RQ+ A V+  L EQF+TG
Sbjct: 145 TMKKYTERQKTAAVDALLIEQFNTG 169



 Score = 66.1 bits (154), Expect = 2e-11
 Identities = 29/40 (72%), Positives = 37/40 (92%)
 Frame = +1

Query: 508 GRLLACVASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 627
           GRLLA ++S PGQ G+A+GYILEGKEL+FYLRKI++K+AK
Sbjct: 169 GRLLARISSSPGQVGQANGYILEGKELDFYLRKIRAKKAK 208


>Z93396-3|CAB07712.1|  597|Caenorhabditis elegans Hypothetical
           protein ZC15.5 protein.
          Length = 597

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 519 QQTPVWNCSSRAPSTLARRCLA 454
           + T  W C +RAP+T+  RC A
Sbjct: 550 EHTHAWTCQTRAPTTIILRCPA 571


>U88315-4|AAB42369.3|  778|Caenorhabditis elegans Hypothetical
           protein C37H5.5 protein.
          Length = 778

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/42 (35%), Positives = 27/42 (64%)
 Frame = +2

Query: 371 RKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEE 496
           +K G     A++  I K+++ KTA+KY  +++LA++E  L E
Sbjct: 424 KKSGKDALIAKKYQIKKEKASKTAKKY--KKQLARLEADLLE 463


>AL132864-3|CAE46684.2|  103|Caenorhabditis elegans Hypothetical
           protein Y53H1A.4 protein.
          Length = 103

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = -2

Query: 289 GLCTHQFIVRCIYTTSMIRVLRVEHSDPQEKLPVSRRSARYLVFPPR 149
           G C+  F++ C++ + + R +R  H  P+ KL V R   RYL+   R
Sbjct: 4   GKCSIIFLLFCVFGSILSRAIRKRH--PEGKL-VIRDCKRYLIMYSR 47


>AF067216-10|AAC17519.1|  492|Caenorhabditis elegans Hypothetical
           protein C35E7.3 protein.
          Length = 492

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = -2

Query: 370 PKRQRIMRLIPLPEWSCIYYNNCILDKGLCTHQFIVRCIYTTSMIRVLRVE 218
           PK  +++ L+PL E  C  +   I  K L  ++ I +  Y T   +  RV+
Sbjct: 44  PKSVKVIDLLPLYESDCDRHKKLIFCKNLMKNRQIFKYAYNTENGKFQRVQ 94


>Z73424-3|CAA97781.2| 1150|Caenorhabditis elegans Hypothetical
           protein C44B9.4 protein.
          Length = 1150

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 15/31 (48%), Positives = 17/31 (54%)
 Frame = -3

Query: 561 IGATTLTWATRHASQQTPVWNCSSRAPSTLA 469
           I A T  WA   AS+Q P  + SS APS  A
Sbjct: 615 ICALTRKWAASGASKQAPPSSSSSEAPSVEA 645


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,628,026
Number of Sequences: 27780
Number of extensions: 303289
Number of successful extensions: 913
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 913
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)