Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20710
         (662 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g20290.1 68418.m02415 40S ribosomal protein S8 (RPS8A) riboso...   124   7e-29
At5g59240.1 68418.m07424 40S ribosomal protein S8 (RPS8B) 40S ri...   123   1e-28
At1g73260.1 68414.m08478 trypsin and protease inhibitor family p...    29   2.8  
At3g60530.1 68416.m06770 zinc finger (GATA type) family protein ...    28   6.4  
At2g22830.1 68415.m02711 squalene monooxygenase, putative / squa...    27   8.4  

>At5g20290.1 68418.m02415 40S ribosomal protein S8 (RPS8A) ribosomal
           protein S8 - Zea mays, PIR:T04088
          Length = 222

 Score =  124 bits (298), Expect = 7e-29
 Identities = 57/84 (67%), Positives = 68/84 (80%), Gaps = 1/84 (1%)
 Frame = +3

Query: 6   MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALR 182
           MGISRD  HKRRATGGK+   RKKRKYE+GR  ANT+L   + +  +R RGGN K+RALR
Sbjct: 1   MGISRDSIHKRRATGGKQKQWRKKRKYEMGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 60

Query: 183 LDTGNFSWGSECSTRKTRIIDVVY 254
           LDTGN+SWGSE +TRKTR++DVVY
Sbjct: 61  LDTGNYSWGSEATTRKTRVLDVVY 84



 Score = 82.6 bits (195), Expect = 2e-16
 Identities = 49/95 (51%), Positives = 60/95 (63%), Gaps = 10/95 (10%)
 Frame = +2

Query: 257 ASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGR-KKGAKLT-----EAEEAII- 415
           ASNNELVRTKTLVK+AIV VDA PF+QWY SHY + LGR KK A  T     E EEA + 
Sbjct: 86  ASNNELVRTKTLVKSAIVQVDAAPFKQWYLSHYGVELGRKKKSASSTKKDGEEGEEAAVA 145

Query: 416 ---NKKRSQKTARKYLARQRLAKVEGALEEQFHTG 511
                K+S    RK  +RQ    ++  +E+QF +G
Sbjct: 146 APEEVKKSNHLLRKIASRQEGRSLDSHIEDQFASG 180



 Score = 77.8 bits (183), Expect = 6e-15
 Identities = 32/40 (80%), Positives = 38/40 (95%)
 Frame = +1

Query: 508 GRLLACVASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 627
           GRLLAC++SRPGQCGRADGYILEGKELEFY++KI+ K+ K
Sbjct: 180 GRLLACISSRPGQCGRADGYILEGKELEFYMKKIQKKKGK 219


>At5g59240.1 68418.m07424 40S ribosomal protein S8 (RPS8B) 40S
           ribosomal protein S8, Prunus armeniaca, EMBL:AF071889
          Length = 210

 Score =  123 bits (296), Expect = 1e-28
 Identities = 59/84 (70%), Positives = 66/84 (78%), Gaps = 1/84 (1%)
 Frame = +3

Query: 6   MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALR 182
           MGISRD  HKRRATGGK+   RKKRKYELGR  ANT+L   + +  +R RGGN K+RALR
Sbjct: 1   MGISRDSIHKRRATGGKQKMWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 60

Query: 183 LDTGNFSWGSECSTRKTRIIDVVY 254
           LDTGNFSWGSE  TRKTRI+DV Y
Sbjct: 61  LDTGNFSWGSEAVTRKTRILDVAY 84



 Score = 78.6 bits (185), Expect = 3e-15
 Identities = 43/85 (50%), Positives = 53/85 (62%)
 Frame = +2

Query: 257 ASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQK 436
           ASNNELVRT+TLVK+AIV VDA PF+Q Y  HY + +GRKK  +    EE     K+S  
Sbjct: 86  ASNNELVRTQTLVKSAIVQVDAAPFKQGYLQHYGVDIGRKKKGEAVTTEEV----KKSNH 141

Query: 437 TARKYLARQRLAKVEGALEEQFHTG 511
             RK   RQ    ++  LEEQF +G
Sbjct: 142 VQRKLEMRQEGRALDSHLEEQFSSG 166



 Score = 78.2 bits (184), Expect = 5e-15
 Identities = 32/40 (80%), Positives = 38/40 (95%)
 Frame = +1

Query: 508 GRLLACVASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 627
           GRLLAC+ASRPGQCGRADGYILEGKELEFY++K++ K+ K
Sbjct: 166 GRLLACIASRPGQCGRADGYILEGKELEFYMKKLQKKKGK 205


>At1g73260.1 68414.m08478 trypsin and protease inhibitor family
           protein / Kunitz family protein similar to trypsin
           inhibitor propeptide [Brassica oleracea] GI:841208;
           contains Pfam profile PF00197: Trypsin and protease
           inhibitor
          Length = 215

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +2

Query: 272 LVRTKTLVKNAI-VVVDATPFRQWYESHYTLPLGRKKGAKLTEA 400
           L  T  L  NA   VVD      ++ES+Y LP+ R +G  LT A
Sbjct: 16  LALTAVLASNAYGAVVDIDGNAMFHESYYVLPVIRGRGGGLTLA 59


>At3g60530.1 68416.m06770 zinc finger (GATA type) family protein
           identical to cDNA for GATA transcription factor 4
           GI:2959735
          Length = 240

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -3

Query: 534 TRHASQQTPVWNCSSRAPSTLARRCLAKY 448
           T  AS++TP W      P TL   C  +Y
Sbjct: 161 THCASEKTPQWRTGPLGPKTLCNACGVRY 189


>At2g22830.1 68415.m02711 squalene monooxygenase, putative /
           squalene epoxidase, putative similar to SP|O65404 (SE
           1,1), SP|O65402 (SE 1,2), SP|O65403 (SE 2)
          Length = 585

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = -3

Query: 351 CDSYHCLNGVASTTTIAFLTRVFVRTNSLLDAYTQHQ*YGFCELNIPIP 205
           C  Y  L GV S+  +A L+ +  R  SL+  +     Y  C L +P P
Sbjct: 492 CFDYLSLGGVFSSGPVALLSGLNPRPLSLVLHFFAVAIYAVCRLMLPFP 540


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,877,343
Number of Sequences: 28952
Number of extensions: 283092
Number of successful extensions: 793
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 791
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1393347168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)