Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20709
         (678 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch...   132   3e-32
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo...   132   3e-32
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual    25   7.6  

>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 294

 Score =  132 bits (320), Expect = 3e-32
 Identities = 55/86 (63%), Positives = 70/86 (81%)
 Frame = +1

Query: 1   VKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQ 180
           +K VK+  YF RYQ K++RRREGKTDYYARKRL+ Q KNKYN PKYRL+VR SN+ VTCQ
Sbjct: 4   IKAVKSSPYFSRYQTKYRRRREGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFVTCQ 63

Query: 181 VAYSRIEGDHIVCAAYSHELPRYGVR 258
           +  SR+ GD+++  A+S ELPRYG++
Sbjct: 64  IVSSRVNGDYVLAHAHSSELPRYGIK 89



 Score = 66.1 bits (154), Expect = 4e-12
 Identities = 35/83 (42%), Positives = 44/83 (53%)
 Frame = +3

Query: 255 KVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDNGPGAFRCYLDV 434
           K GL N+ AAY+TG                              E +++GP  F+ +LDV
Sbjct: 89  KWGLANWTAAYATGLLVARRALAKVGLADKYEGVTEPEGEFELTEAIEDGPRPFKVFLDV 148

Query: 435 GLARTTTGARVFGAMKGAVDGGL 503
           GL RT+TG+RVFGAMKGA DGGL
Sbjct: 149 GLKRTSTGSRVFGAMKGASDGGL 171



 Score = 62.5 bits (145), Expect = 5e-11
 Identities = 27/54 (50%), Positives = 38/54 (70%)
 Frame = +2

Query: 509 PHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQFSKYI 670
           PHS  RFPG+D E+++ + E  R +I+G HVAEYM  L  DDE+ +++QFS  I
Sbjct: 174 PHSPNRFPGFDIETEELDDETLRKYIYGGHVAEYMEMLIDDDEERYQKQFSGLI 227


>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score =  132 bits (320), Expect = 3e-32
 Identities = 55/86 (63%), Positives = 70/86 (81%)
 Frame = +1

Query: 1   VKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQ 180
           +K VK+  YF RYQ K++RRREGKTDYYARKRL+ Q KNKYN PKYRL+VR SN+ VTCQ
Sbjct: 4   IKAVKSSPYFSRYQTKYRRRREGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFVTCQ 63

Query: 181 VAYSRIEGDHIVCAAYSHELPRYGVR 258
           +  SR+ GD+++  A+S ELPRYG++
Sbjct: 64  IVSSRVNGDYVLAHAHSSELPRYGIK 89



 Score = 66.1 bits (154), Expect = 4e-12
 Identities = 35/83 (42%), Positives = 44/83 (53%)
 Frame = +3

Query: 255 KVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDNGPGAFRCYLDV 434
           K GL N+ AAY+TG                              E +++GP  F+ +LDV
Sbjct: 89  KWGLANWTAAYATGLLVARRALAKVGLADKYEGVTEPEGEFELTEAIEDGPRPFKVFLDV 148

Query: 435 GLARTTTGARVFGAMKGAVDGGL 503
           GL RT+TG+RVFGAMKGA DGGL
Sbjct: 149 GLKRTSTGSRVFGAMKGASDGGL 171



 Score = 62.5 bits (145), Expect = 5e-11
 Identities = 27/54 (50%), Positives = 38/54 (70%)
 Frame = +2

Query: 509 PHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQFSKYI 670
           PHS  RFPG+D E+++ + E  R +I+G HVAEYM  L  DDE+ +++QFS  I
Sbjct: 174 PHSPNRFPGFDIETEELDDETLRKYIYGGHVAEYMEMLIDDDEERYQKQFSGLI 227


>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 978

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +2

Query: 602  AEYMRSLEQDDEDSFKRQFSKYIK 673
            +EY+++L   D  SFK+ F K+I+
Sbjct: 948  SEYLQALSNLDSRSFKQFFQKFIQ 971


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,750,620
Number of Sequences: 5004
Number of extensions: 56079
Number of successful extensions: 170
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)