Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20709
         (678 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1659 + 38961637-38961639,38962361-38962433,38962531-389626...   122   3e-28
01_06_1660 + 38966999-38967001,38967685-38967757,38967841-389679...   120   1e-27
08_02_1410 - 26876243-26876497,26877129-26877239,26877240-268773...    28   7.9  
03_03_0067 + 14230211-14231506                                         28   7.9  

>01_06_1659 +
           38961637-38961639,38962361-38962433,38962531-38962613,
           38962732-38962858,38962950-38963029,38963112-38963228,
           38963393-38963527,38963714-38963883,38963970-38964087
          Length = 301

 Score =  122 bits (294), Expect = 3e-28
 Identities = 56/87 (64%), Positives = 67/87 (77%)
 Frame = +1

Query: 1   VKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQ 180
           VK  K   YFKR+QVKFKRRR+GKTDY AR RL  QDKNKYNTPKYR +   +NKD+T Q
Sbjct: 5   VKTQKTHAYFKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFV---TNKDITAQ 61

Query: 181 VAYSRIEGDHIVCAAYSHELPRYGVRL 261
           + Y+ I GD ++ AAYSHELPRYG+ +
Sbjct: 62  IVYATIAGDIVMAAAYSHELPRYGLEV 88



 Score = 74.5 bits (175), Expect = 7e-14
 Identities = 41/85 (48%), Positives = 47/85 (55%)
 Frame = +3

Query: 255 KVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDNGPGAFRCYLDV 434
           +VGLTNYAAAY TG                          +Y VEP D     FR  LDV
Sbjct: 87  EVGLTNYAAAYCTGLLLARRVLTLRGLDQEYEGNVEATGEDYYVEPADERR-PFRALLDV 145

Query: 435 GLARTTTGARVFGAMKGAVDGGLNV 509
           GL RTTTG RVFGA+KGA+DGGL++
Sbjct: 146 GLIRTTTGNRVFGALKGALDGGLDI 170



 Score = 66.1 bits (154), Expect = 2e-11
 Identities = 24/55 (43%), Positives = 42/55 (76%)
 Frame = +2

Query: 509 PHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQFSKYIK 673
           PHS KRF G+  + K+ ++++HR +I+G HVA+YMRS+ +++ + F+  FS+Y+K
Sbjct: 171 PHSDKRFAGFKKDEKQLDSDIHRKYIYGGHVADYMRSMAEEEPEKFQAHFSEYLK 225


>01_06_1660 +
           38966999-38967001,38967685-38967757,38967841-38967923,
           38968042-38968168,38968260-38968339,38968428-38968544,
           38968711-38968845,38969046-38969215,38969300-38969417
          Length = 301

 Score =  120 bits (288), Expect = 1e-27
 Identities = 55/87 (63%), Positives = 66/87 (75%)
 Frame = +1

Query: 1   VKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQ 180
           VK  K   Y KR+QVKFKRRR+GKTDY AR RL  QDKNKYNTPKYR +   +NKD+T Q
Sbjct: 5   VKTQKTNAYHKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFV---TNKDITAQ 61

Query: 181 VAYSRIEGDHIVCAAYSHELPRYGVRL 261
           + Y+ I GD ++ AAYSHELPRYG+ +
Sbjct: 62  IVYATIAGDIVMAAAYSHELPRYGLEV 88



 Score = 74.5 bits (175), Expect = 7e-14
 Identities = 41/85 (48%), Positives = 47/85 (55%)
 Frame = +3

Query: 255 KVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDNGPGAFRCYLDV 434
           +VGLTNYAAAY TG                          +Y VEP D     FR  LDV
Sbjct: 87  EVGLTNYAAAYCTGLLLARRVLKLRGLDQEYEGNIEATGEDYYVEPADERR-PFRALLDV 145

Query: 435 GLARTTTGARVFGAMKGAVDGGLNV 509
           GL RTTTG RVFGA+KGA+DGGL++
Sbjct: 146 GLIRTTTGNRVFGALKGALDGGLDI 170



 Score = 66.1 bits (154), Expect = 2e-11
 Identities = 24/55 (43%), Positives = 42/55 (76%)
 Frame = +2

Query: 509 PHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQFSKYIK 673
           PHS KRF G+  + K+ ++++HR +I+G HVA+YMRS+ +++ + F+  FS+Y+K
Sbjct: 171 PHSDKRFAGFKKDEKQLDSDIHRKYIYGGHVADYMRSMAEEEPEKFQAHFSEYLK 225


>08_02_1410 -
           26876243-26876497,26877129-26877239,26877240-26877324,
           26877620-26877672,26878318-26878440,26878514-26878597,
           26878708-26878773,26879512-26879584,26879854-26879888,
           26879970-26880212
          Length = 375

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +1

Query: 118 KYNTPKYRLIVRLSNKDVTCQVAYSRI--EGDHIVCAAYSHEL 240
           +YNT +YR +  +S K V C+ +   +  E DH+   A S  L
Sbjct: 274 RYNTSRYRELPHISIKCVFCKASVEPMGEESDHVHIIALSDAL 316


>03_03_0067 + 14230211-14231506
          Length = 431

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = -3

Query: 526 SFDGMRTLRPPSTAPFIAPKTRAPVVVRAKPTSK*HLNAPGPLSTG 389
           S+DG+  L P  TA F+ P+      V   P +K   + P P + G
Sbjct: 110 SWDGVVCLVPRPTAGFVRPRNPIDRYVLVNPLTKACTSVPPPATRG 155


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,682,646
Number of Sequences: 37544
Number of extensions: 363815
Number of successful extensions: 841
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 833
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)