Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20709
         (678 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0)             101   7e-22
SB_35225| Best HMM Match : Ribosomal_L18p (HMM E-Value=4e-30)         100   9e-22
SB_50387| Best HMM Match : HLH (HMM E-Value=8.2e-05)                   31   0.86 
SB_33613| Best HMM Match : PAS (HMM E-Value=0.0083)                    31   0.86 
SB_56509| Best HMM Match : Ebp2 (HMM E-Value=2.1)                      30   2.0  
SB_11523| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.0  

>SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0)
          Length = 328

 Score =  101 bits (241), Expect = 7e-22
 Identities = 50/85 (58%), Positives = 54/85 (63%)
 Frame = +3

Query: 255 KVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDNGPGAFRCYLDV 434
           KVGLTNYAAAY TG                          EYNVE VD  PGAFRC+LDV
Sbjct: 121 KVGLTNYAAAYCTGLLLARRLLTMLNLHEIYTGTDDVNGDEYNVESVDGSPGAFRCFLDV 180

Query: 435 GLARTTTGARVFGAMKGAVDGGLNV 509
           GLART+TGARVFGA+KGAVDGGL +
Sbjct: 181 GLARTSTGARVFGALKGAVDGGLEI 205



 Score =  100 bits (239), Expect = 1e-21
 Identities = 43/57 (75%), Positives = 51/57 (89%)
 Frame = +2

Query: 503 QCPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQFSKYIK 673
           + PHS+KRFPGYD+ESK F+AEVHR HIFG HVAEYMRSL ++DE+S+KRQFS YIK
Sbjct: 204 EIPHSMKRFPGYDSESKDFSAEVHRNHIFGKHVAEYMRSLAEEDEESYKRQFSAYIK 260



 Score = 80.6 bits (190), Expect = 1e-15
 Identities = 32/42 (76%), Positives = 38/42 (90%)
 Frame = +1

Query: 55  RRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQ 180
           RR +GKTDYYARKRL+ QDKNKYNTPKYR +VR++NKD+ CQ
Sbjct: 17  RRSQGKTDYYARKRLITQDKNKYNTPKYRFVVRITNKDIICQ 58


>SB_35225| Best HMM Match : Ribosomal_L18p (HMM E-Value=4e-30)
          Length = 113

 Score =  100 bits (240), Expect = 9e-22
 Identities = 49/85 (57%), Positives = 54/85 (63%)
 Frame = +3

Query: 255 KVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDNGPGAFRCYLDV 434
           KVGLTNYAAAY TG                          EYNVE +D  PGAFRC+LDV
Sbjct: 26  KVGLTNYAAAYCTGLLLARRLLTKLNLHEIYTGTEEVNGDEYNVESIDGSPGAFRCFLDV 85

Query: 435 GLARTTTGARVFGAMKGAVDGGLNV 509
           GLART+TGARVFGA+KGAVDGGL +
Sbjct: 86  GLARTSTGARVFGALKGAVDGGLEI 110



 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 18/27 (66%), Positives = 26/27 (96%)
 Frame = +1

Query: 181 VAYSRIEGDHIVCAAYSHELPRYGVRL 261
           +AY+++EGD I+CAAY+HELPRYGV++
Sbjct: 1   IAYAKLEGDVIICAAYAHELPRYGVKV 27


>SB_50387| Best HMM Match : HLH (HMM E-Value=8.2e-05)
          Length = 791

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -3

Query: 532 RESFDGMRTLRPPSTAPFIAPKTRAPVVVRAKPTSK*HLNAPGPLST 392
           R +++    +RP    PF+ P +RAP    A PT+      P P S+
Sbjct: 347 RNAYNPHAMMRPAHIGPFLYPDSRAPFSPLASPTASSDSGHPSPGSS 393


>SB_33613| Best HMM Match : PAS (HMM E-Value=0.0083)
          Length = 624

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -3

Query: 532 RESFDGMRTLRPPSTAPFIAPKTRAPVVVRAKPTSK*HLNAPGPLST 392
           R +++    +RP    PF+ P +RAP    A PT+      P P S+
Sbjct: 213 RNAYNPHAMMRPAHIGPFLYPDSRAPFSPLASPTASSDSGHPSPGSS 259


>SB_56509| Best HMM Match : Ebp2 (HMM E-Value=2.1)
          Length = 298

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = +2

Query: 539 DAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQFSKYIK 673
           D+  K+ NAE+ RA      +++ ++S   D+E +  R+F  + K
Sbjct: 157 DSSVKRGNAEIRRARFRATTISQVVQSFRSDEERNSVRKFIAHYK 201


>SB_11523| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 411

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +1

Query: 142 LIVRLSNKDVTCQVAYSRIEGD-HIVC 219
           L++ LS +D+TC V YS   G+ H +C
Sbjct: 108 LLLYLSKRDITCPVPYSSRNGELHTMC 134


>SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2735

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +1

Query: 10  VKNKQYFKRYQVKFKRRREGKTDYYARKRLVV 105
           VK+K+  KR   K KR+ + K+D + RK+ ++
Sbjct: 228 VKHKRKQKRKSAKHKRKHKRKSDKHKRKQTLI 259


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,913,247
Number of Sequences: 59808
Number of extensions: 448515
Number of successful extensions: 1362
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1359
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)