Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20709
         (678 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g25520.1 68416.m03173 60S ribosomal protein L5 similar to 60S...   123   1e-28
At5g39740.1 68418.m04813 60S ribosomal protein L5 (RPL5B) riboso...   122   2e-28
At3g19390.1 68416.m02459 cysteine proteinase, putative / thiol p...    29   3.7  
At4g36540.2 68417.m05189 basic helix-loop-helix (bHLH) family pr...    28   4.9  
At4g36540.1 68417.m05188 basic helix-loop-helix (bHLH) family pr...    28   4.9  

>At3g25520.1 68416.m03173 60S ribosomal protein L5 similar to 60S
           ribosomal protein L5 GB:P49625 from [Oryza sativa]
          Length = 301

 Score =  123 bits (296), Expect = 1e-28
 Identities = 53/85 (62%), Positives = 67/85 (78%)
 Frame = +1

Query: 1   VKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQ 180
           VK  K+  YFKRYQVKF+RRR+GKTDY AR RL+ QDKNKYNTPKYR +VR +NKD+  Q
Sbjct: 4   VKSTKSNAYFKRYQVKFRRRRDGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIVAQ 63

Query: 181 VAYSRIEGDHIVCAAYSHELPRYGV 255
           +  + I GD +  +AY+HELP+YG+
Sbjct: 64  IVSASIAGDIVKASAYAHELPQYGL 88



 Score = 74.1 bits (174), Expect = 8e-14
 Identities = 40/84 (47%), Positives = 48/84 (57%)
 Frame = +3

Query: 258 VGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDNGPGAFRCYLDVG 437
           VGLTNYAAAY TG                          +++VEP D+    FR  LDVG
Sbjct: 90  VGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDFSVEPTDSRR-PFRALLDVG 148

Query: 438 LARTTTGARVFGAMKGAVDGGLNV 509
           L RTTTG RVFGA+KGA+DGGL++
Sbjct: 149 LIRTTTGNRVFGALKGALDGGLDI 172



 Score = 63.7 bits (148), Expect = 1e-10
 Identities = 26/55 (47%), Positives = 39/55 (70%)
 Frame = +2

Query: 509 PHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQFSKYIK 673
           PHS KRF G+  E+K+ +AE+HR +I+G HV+ YM+ L +D+ +  +  FS YIK
Sbjct: 173 PHSDKRFAGFHKENKQLDAEIHRNYIYGGHVSNYMKLLGEDEPEKLQTHFSAYIK 227


>At5g39740.1 68418.m04813 60S ribosomal protein L5 (RPL5B) ribosomal
           protein L5, rice
          Length = 301

 Score =  122 bits (294), Expect = 2e-28
 Identities = 53/85 (62%), Positives = 67/85 (78%)
 Frame = +1

Query: 1   VKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQ 180
           VK  K+  YFKRYQVKF+RRR+GKTDY AR RL+ QDKNKYNTPKYR +VR +NKD+  Q
Sbjct: 4   VKSSKSNAYFKRYQVKFRRRRDGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIVAQ 63

Query: 181 VAYSRIEGDHIVCAAYSHELPRYGV 255
           +  + I GD +  +AY+HELP+YG+
Sbjct: 64  IVSASIAGDIVKASAYAHELPQYGL 88



 Score = 74.1 bits (174), Expect = 8e-14
 Identities = 40/84 (47%), Positives = 48/84 (57%)
 Frame = +3

Query: 258 VGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDNGPGAFRCYLDVG 437
           VGLTNYAAAY TG                          +++VEP D+    FR  LDVG
Sbjct: 90  VGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDFSVEPTDSRR-PFRALLDVG 148

Query: 438 LARTTTGARVFGAMKGAVDGGLNV 509
           L RTTTG RVFGA+KGA+DGGL++
Sbjct: 149 LIRTTTGNRVFGALKGALDGGLDI 172



 Score = 63.7 bits (148), Expect = 1e-10
 Identities = 26/55 (47%), Positives = 39/55 (70%)
 Frame = +2

Query: 509 PHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQFSKYIK 673
           PHS KRF G+  E+K+ +AE+HR +I+G HV+ YM+ L +D+ +  +  FS YIK
Sbjct: 173 PHSDKRFAGFHKENKQLDAEIHRNYIYGGHVSNYMKLLGEDEPEKLQTHFSAYIK 227


>At3g19390.1 68416.m02459 cysteine proteinase, putative / thiol
           protease, putative contains similarity to cysteine
           proteinase RD21A (thiol protease) GI:435619, SP:P43297
           from [Arabidopsis thaliana]
          Length = 452

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +2

Query: 458 CSCLWSYEGCC*RWPQCPH 514
           C CL+ Y G C  W  CP+
Sbjct: 375 CCCLYEYNGKCYSWGCCPY 393


>At4g36540.2 68417.m05189 basic helix-loop-helix (bHLH) family
           protein contains Pfam domain, PF00010: Helix-loop-helix
           DNA-binding domain
          Length = 302

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/58 (24%), Positives = 32/58 (55%)
 Frame = +1

Query: 10  VKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQV 183
           VKN  + +   ++ KR+ EGKT+   +K++  +D+ +   P  +    +SN + + ++
Sbjct: 79  VKNNGHSRAITLQNKRKPEGKTEKREKKKIKAEDETE---PSMKGKSNMSNTETSSEI 133


>At4g36540.1 68417.m05188 basic helix-loop-helix (bHLH) family
           protein contains Pfam domain, PF00010: Helix-loop-helix
           DNA-binding domain
          Length = 304

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/58 (24%), Positives = 32/58 (55%)
 Frame = +1

Query: 10  VKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQV 183
           VKN  + +   ++ KR+ EGKT+   +K++  +D+ +   P  +    +SN + + ++
Sbjct: 79  VKNNGHSRAITLQNKRKPEGKTEKREKKKIKAEDETE---PSMKGKSNMSNTETSSEI 133


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,281,643
Number of Sequences: 28952
Number of extensions: 293176
Number of successful extensions: 783
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)