Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20707
(714 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 111 1e-25
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ... 77 3e-15
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit... 71 2e-13
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C... 64 2e-11
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 64 2e-11
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni... 62 6e-11
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 60 2e-10
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C... 50 3e-07
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60... 32 0.071
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 28 1.5
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho... 27 3.5
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|... 26 4.7
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst... 26 4.7
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 26 6.1
SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|c... 25 8.1
SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|c... 25 8.1
>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
Cct7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 558
Score = 111 bits (267), Expect = 1e-25
Identities = 51/77 (66%), Positives = 63/77 (81%)
Frame = +3
Query: 33 QPQILLLREGTDQTQGKPQLVSNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISNDG 212
Q +++L+EGTD +QG+ QL+SNINAC V D +RTTLGP G DKL+VD G+ VISNDG
Sbjct: 7 QIPVIVLKEGTDDSQGRGQLLSNINACVAVQDTIRTTLGPLGADKLMVDDRGEVVISNDG 66
Query: 213 ATIMKLLDIIHPAARLL 263
ATIMKLLDI+HPAA+ L
Sbjct: 67 ATIMKLLDIVHPAAKTL 83
Score = 103 bits (247), Expect = 3e-23
Identities = 50/88 (56%), Positives = 65/88 (73%)
Frame = +2
Query: 245 PCR*TLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAI 424
P TLVDIA++QDAEVGDGTTSVV+ AGE+L+ + FVE+GV ++IR R A++LA+
Sbjct: 78 PAAKTLVDIARAQDAEVGDGTTSVVVFAGELLREARTFVEDGVSSHLIIRGYRKAAQLAV 137
Query: 425 EKIKEQAVKIDNKSPEEQRDLLLKCAST 508
KIKE A+ +D + RDLL KCAST
Sbjct: 138 NKIKEIAIHLDLSDEGKLRDLLTKCAST 165
Score = 55.2 bits (127), Expect = 9e-09
Identities = 25/32 (78%), Positives = 27/32 (84%)
Frame = +3
Query: 618 QKGSGGALEDSFLVPGVAFKKTFSYAGFEMQP 713
+K GGA+EDS LV GVAFKKTFSYAGFE QP
Sbjct: 203 KKVPGGAMEDSLLVKGVAFKKTFSYAGFEQQP 234
Score = 49.2 bits (112), Expect = 6e-07
Identities = 28/54 (51%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Frame = +1
Query: 472 GTKRSPIEVCINT-MSSKLIHQQKDHFSKIVVDAVLSLDTPLLPLDMIGIKKVP 630
G R + C +T M+SKLI F+K+VVDAVL+LD L +MIGIKKVP
Sbjct: 153 GKLRDLLTKCASTAMNSKLIRSNSTFFTKMVVDAVLTLDQEDLNENMIGIKKVP 206
>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
Cct4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 527
Score = 77.0 bits (181), Expect = 3e-15
Identities = 36/67 (53%), Positives = 51/67 (76%), Gaps = 2/67 (2%)
Frame = +3
Query: 69 QTQGKPQLV--SNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDII 242
Q + KPQ V SNI A + V DA+RT+LGP+GMDK+I G+ +++NDGATI+K L ++
Sbjct: 12 QDREKPQEVRLSNIMAARSVADAIRTSLGPKGMDKMIQTGKGEVILTNDGATILKHLSVL 71
Query: 243 HPAARLL 263
HPAA++L
Sbjct: 72 HPAAKML 78
Score = 66.1 bits (154), Expect = 5e-12
Identities = 34/88 (38%), Positives = 55/88 (62%)
Frame = +2
Query: 245 PCR*TLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAI 424
P LVD++ +QD E GDGTTSVVILAG +L + +++G+HP V+ + + A+ +
Sbjct: 73 PAAKMLVDLSAAQDVEAGDGTTSVVILAGSMLACAEKLLKKGIHPTVIAESFQRAAGFTV 132
Query: 425 EKIKEQAVKIDNKSPEEQRDLLLKCAST 508
+ +KE A+ I+ R+ LL+ A+T
Sbjct: 133 DCMKENALAIE----LSDRESLLRAATT 156
>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
Cct3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 70.5 bits (165), Expect = 2e-13
Identities = 34/89 (38%), Positives = 54/89 (60%)
Frame = +2
Query: 245 PCR*TLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAI 424
P +++++A++QD EVGDGTTSV+ILAGEIL P ++ +HP V+IR+ + A A+
Sbjct: 73 PAAKSMIELARTQDEEVGDGTTSVIILAGEILAAASPLLDRKIHPVVMIRSFKQALEDAL 132
Query: 425 EKIKEQAVKIDNKSPEEQRDLLLKCASTR 511
I E + ++ E L+ C T+
Sbjct: 133 SIIDEITLPVNVDDNAEMFRLIRTCIGTK 161
Score = 63.7 bits (148), Expect = 3e-11
Identities = 27/76 (35%), Positives = 47/76 (61%)
Frame = +3
Query: 30 MQPQILLLREGTDQTQGKPQLVSNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISND 209
MQ + ++ ++ G +SNI A + V D +RT LGPR M K+++D G +++ND
Sbjct: 1 MQSPVFVMNTNGNRQVGHKAQMSNIQAAKAVADVIRTCLGPRAMLKMLLDPVGSVLLTND 60
Query: 210 GATIMKLLDIIHPAAR 257
G I++ +++ HPAA+
Sbjct: 61 GHAILREIEVAHPAAK 76
>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
Cct2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 64.1 bits (149), Expect = 2e-11
Identities = 37/84 (44%), Positives = 53/84 (63%), Gaps = 1/84 (1%)
Frame = +2
Query: 260 LVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKE 439
LV+I+K QD EVGDGTTSV + A E+L++ + V +HP+V+I R A++ AI+ ++
Sbjct: 80 LVNISKVQDDEVGDGTTSVCVFAAELLRQAEIMVNAKIHPQVIIDGYRIATKTAIDALR- 138
Query: 440 QAVKIDNKS-PEEQRDLLLKCAST 508
A IDN S P + R L A T
Sbjct: 139 -ASSIDNSSDPAKFRSDLENIART 161
Score = 53.2 bits (122), Expect = 4e-08
Identities = 27/73 (36%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Frame = +3
Query: 48 LLREGTDQTQGKPQLVSNINACQLVVDAVRTTLGPRGMDKLIVDH-NGKAVISNDGATIM 224
+ E Q +G+ +S+ V D V++TLGP+GMDK++ + +G V++NDGATI+
Sbjct: 8 IFNESGIQERGENARLSSFVGAIAVGDLVKSTLGPKGMDKILQSNSSGDIVVTNDGATIL 67
Query: 225 KLLDIIHPAARLL 263
K + + + AA++L
Sbjct: 68 KSIALDNAAAKVL 80
Score = 37.1 bits (82), Expect = 0.002
Identities = 22/50 (44%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Frame = +1
Query: 481 RSPIE-VCINTMSSKLIHQQKDHFSKIVVDAVLSLDTPLLPLDMIGIKKV 627
RS +E + T+SSK++ Q K+HF+++ VDAVL L LD I I K+
Sbjct: 152 RSDLENIARTTLSSKILSQNKNHFAQLAVDAVLRLKGS-TNLDNIQIIKI 200
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 64.1 bits (149), Expect = 2e-11
Identities = 30/73 (41%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
Frame = +3
Query: 48 LLREGTDQTQG-KPQLVSNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIM 224
L REG QG + ++ N NA + + + RT+LGP G +K++V+H + ++ND ATI+
Sbjct: 13 LFREGYRIMQGVEDAVIRNCNAIRELSEITRTSLGPNGKNKIVVNHLQQTFLTNDAATII 72
Query: 225 KLLDIIHPAARLL 263
+ L++IHPAA+L+
Sbjct: 73 RELEVIHPAAKLV 85
Score = 39.1 bits (87), Expect = 6e-04
Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Frame = +2
Query: 245 PCR*TLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAI 424
P +VD + Q+ E+GD VV+ GE+L + + + G+ P + + A +
Sbjct: 80 PAAKLVVDATQQQENELGDAANFVVVFTGELLAKAENMIRMGLTPLEIAKGYEMALSHTM 139
Query: 425 EKIKE-QAVKIDN-KSPEEQRDLLLKCASTRCHRN 523
E ++E A KI+ +S +E + C S++ + N
Sbjct: 140 EVLEEICADKIETVESEKELIKAIRTCISSKQYGN 174
>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
Cct1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 62.5 bits (145), Expect = 6e-11
Identities = 26/66 (39%), Positives = 44/66 (66%)
Frame = +3
Query: 66 DQTQGKPQLVSNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDIIH 245
++ G+ N+ A + + V+++LGP G+DK++VD G ++NDGATI+ LLD+ H
Sbjct: 15 EKISGEDVRNQNVLATTAIANVVKSSLGPVGLDKMLVDDIGDVTVTNDGATILSLLDVEH 74
Query: 246 PAARLL 263
PA ++L
Sbjct: 75 PAGKVL 80
Score = 61.7 bits (143), Expect = 1e-10
Identities = 29/61 (47%), Positives = 40/61 (65%)
Frame = +2
Query: 245 PCR*TLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAI 424
P LV++A+ QD EVGDGTTSVVI+A E+L+R V+ +HP +I R A R A+
Sbjct: 75 PAGKVLVELAQQQDKEVGDGTTSVVIIAAELLRRANELVKNKIHPTTIITGYRLAIREAV 134
Query: 425 E 427
+
Sbjct: 135 K 135
Score = 35.1 bits (77), Expect = 0.010
Identities = 18/37 (48%), Positives = 23/37 (62%)
Frame = +1
Query: 478 KRSPIEVCINTMSSKLIHQQKDHFSKIVVDAVLSLDT 588
K S I V +MSSK+I D FS + VDA+LS+ T
Sbjct: 150 KESLINVAKTSMSSKIIGNDSDFFSTMAVDAMLSVKT 186
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 60.5 bits (140), Expect = 2e-10
Identities = 27/70 (38%), Positives = 47/70 (67%)
Frame = +3
Query: 54 REGTDQTQGKPQLVSNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLL 233
+E + G + S+I A + V + VRT+LGPRG+DK+++ +G+ ++NDGATI+ +
Sbjct: 24 QEKKRRLHGIDAVKSHILATKTVANIVRTSLGPRGLDKILISPDGEITVTNDGATILDQM 83
Query: 234 DIIHPAARLL 263
++ H A+LL
Sbjct: 84 EVEHQIAKLL 93
Score = 58.8 bits (136), Expect = 7e-10
Identities = 28/76 (36%), Positives = 49/76 (64%)
Frame = +2
Query: 260 LVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKE 439
LV ++KSQD E+GDGTT VV+LAG +L++ + +++G+HP + A ++A++ +
Sbjct: 93 LVQLSKSQDDEIGDGTTGVVVLAGALLEQAEALIDKGIHPIRIADGYEKACQVAVKHLDA 152
Query: 440 QAVKIDNKSPEEQRDL 487
+ +D SPE +L
Sbjct: 153 ISDVVD-FSPENTTNL 167
Score = 30.7 bits (66), Expect = 0.22
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = +1
Query: 508 TMSSKLIHQQKDHFSKIVVDAVLSL 582
++ SK++ + DHF+ I VDAVLS+
Sbjct: 174 SLGSKVVSKAHDHFANIAVDAVLSV 198
>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
Cct6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 50.0 bits (114), Expect = 3e-07
Identities = 30/89 (33%), Positives = 47/89 (52%)
Frame = +2
Query: 242 SPCR*TLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLA 421
+P + A +QD GDGTTSV +L GE+LK+ + ++ EG+HP ++ A A
Sbjct: 69 NPTASCIAKAATAQDDATGDGTTSVCLLVGELLKQAELYIREGLHPSLISDGFNLAKNEA 128
Query: 422 IEKIKEQAVKIDNKSPEEQRDLLLKCAST 508
+ + + K D E R++LL A T
Sbjct: 129 LTFL--DSFKTDF---EVDREVLLNVAKT 152
Score = 39.9 bits (89), Expect = 4e-04
Identities = 21/69 (30%), Positives = 35/69 (50%)
Frame = +3
Query: 48 LLREGTDQTQGKPQLVSNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMK 227
LL + Q L NI+A + D +++ LGP G K++VD G ++ DG ++
Sbjct: 4 LLNPKAESIQRAQALQVNISAAIGLQDVLKSNLGPTGTTKMLVDGAGAIKLTKDGKVLLT 63
Query: 228 LLDIIHPAA 254
+ I +P A
Sbjct: 64 EMQIQNPTA 72
Score = 25.8 bits (54), Expect = 6.1
Identities = 11/40 (27%), Positives = 24/40 (60%)
Frame = +1
Query: 490 IEVCINTMSSKLIHQQKDHFSKIVVDAVLSLDTPLLPLDM 609
+ V ++S+K+ + + + VVDA+L++ P P+D+
Sbjct: 147 LNVAKTSLSTKISSKVVESLAPAVVDAILTIRRPDEPIDL 186
>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
Length = 582
Score = 32.3 bits (70), Expect = 0.071
Identities = 22/70 (31%), Positives = 32/70 (45%)
Frame = +2
Query: 266 DIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQA 445
D+A + GDGTT+ +L I V G +P L R ++ A +E + QA
Sbjct: 107 DVASKTNEVAGDGTTTATVLTRAIFSETVRNVAAGCNPMDLRRGIQLAVDNVVEFL--QA 164
Query: 446 VKIDNKSPEE 475
K D + EE
Sbjct: 165 NKRDITTSEE 174
Score = 30.3 bits (65), Expect = 0.29
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +3
Query: 129 AVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDI 239
AV TLGP+G + LI G I+ DG T+ + + +
Sbjct: 57 AVSVTLGPKGRNVLIDQPFGSPKITKDGVTVARSVSL 93
>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 27.9 bits (59), Expect = 1.5
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -1
Query: 624 LFDSNHVERQKWSVQRQDSINNNLREVV 541
LFDSNHV+ QK +DS N L +++
Sbjct: 56 LFDSNHVDGQKGDSVLRDSANAPLTDLM 83
>SPBC3E7.01 |fab1|ste12,
SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1932
Score = 26.6 bits (56), Expect = 3.5
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +3
Query: 618 QKGSGGALEDSFLVPGVAFKKTFS 689
+K GG+++D FLV GV F K S
Sbjct: 528 KKIPGGSIQDCFLVNGVLFSKKAS 551
>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
Snf21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1199
Score = 26.2 bits (55), Expect = 4.7
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +2
Query: 362 EEGVHPRVLIRAVRTASRLAIEKIKEQAVKIDNKSPEEQRDLLLK 496
E+ V +L RA +L I+ QA K DNKS E+R+ L+
Sbjct: 863 EKSVEENILARA---QYKLDIDGKVIQAGKFDNKSTPEEREAFLR 904
>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
Pst2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1075
Score = 26.2 bits (55), Expect = 4.7
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -1
Query: 669 PHQVPGTSLQELHRNLFDSNHVERQKWSVQRQDSINNNLREV 544
P++ T L+E R FD H+E W+++ I N + E+
Sbjct: 388 PYEEAMTKLEE-ERYEFD-RHIEATSWTIKSLKKIQNRINEL 427
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 25.8 bits (54), Expect = 6.1
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +2
Query: 347 LKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVKIDNKSPEEQRDLLLK 496
L+ E+ + +L RA +L ++ QA K DNKS E+R+ L+
Sbjct: 1309 LRLITEKSIEENILSRA---QYKLDLDGKVIQAGKFDNKSTPEEREAFLR 1355
>SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 489
Score = 25.4 bits (53), Expect = 8.1
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +3
Query: 585 HSTSASRHDWNQKGSGGALEDSFLVPGVAF 674
H TS DW Q+G GGAL +L+ G+ +
Sbjct: 337 HDTSPDL-DWTQRGYGGALV-LYLLMGIQY 364
>SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 603
Score = 25.4 bits (53), Expect = 8.1
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -2
Query: 185 IVIYNQLVHTTGTQGGSDRIDNKL 114
++I+N LVH T T+ S+ + N L
Sbjct: 503 LIIFNNLVHETDTETDSETLLNDL 526
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,994,378
Number of Sequences: 5004
Number of extensions: 61166
Number of successful extensions: 205
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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