Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20707
(714 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_22388| Best HMM Match : Extensin_2 (HMM E-Value=0.086) 126 1e-29
SB_25097| Best HMM Match : No HMM Matches (HMM E-Value=.) 66 2e-11
SB_25096| Best HMM Match : No HMM Matches (HMM E-Value=.) 66 2e-11
SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0) 64 8e-11
SB_4934| Best HMM Match : NAD_binding_2 (HMM E-Value=4.8) 62 4e-10
SB_57454| Best HMM Match : DUF924 (HMM E-Value=1) 61 1e-09
SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.) 60 2e-09
SB_3351| Best HMM Match : No HMM Matches (HMM E-Value=.) 60 2e-09
SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0) 59 4e-09
SB_56262| Best HMM Match : Cpn60_TCP1 (HMM E-Value=6.6e-15) 36 0.025
SB_49248| Best HMM Match : Cpn60_TCP1 (HMM E-Value=1.6) 35 0.057
SB_30876| Best HMM Match : Ribosomal_S16 (HMM E-Value=7.1) 31 0.70
SB_29096| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.93
SB_48461| Best HMM Match : zf-CCHC (HMM E-Value=0.0016) 29 3.7
SB_40686| Best HMM Match : rve (HMM E-Value=0.00016) 29 4.9
SB_41690| Best HMM Match : DSL (HMM E-Value=0) 28 6.5
SB_6378| Best HMM Match : Keratin_B2 (HMM E-Value=0.1) 28 6.5
SB_3214| Best HMM Match : Keratin_B2 (HMM E-Value=0.096) 28 6.5
SB_56859| Best HMM Match : rve (HMM E-Value=4.8e-35) 28 8.6
SB_53400| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
SB_22952| Best HMM Match : EGF_2 (HMM E-Value=2e-23) 28 8.6
SB_41314| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
SB_34182| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
>SB_22388| Best HMM Match : Extensin_2 (HMM E-Value=0.086)
Length = 724
Score = 126 bits (305), Expect = 1e-29
Identities = 59/81 (72%), Positives = 69/81 (85%)
Frame = +3
Query: 21 SSKMQPQILLLREGTDQTQGKPQLVSNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVI 200
+S QP I+LL+EGTD +QG PQL+SNI+ACQ + DAVRTTLGPRGMDKLIVD GKA I
Sbjct: 634 ASGPQPGIILLKEGTDASQGIPQLISNIDACQFIADAVRTTLGPRGMDKLIVDGRGKATI 693
Query: 201 SNDGATIMKLLDIIHPAARLL 263
SNDGATI+ LLDI+HPAA+ L
Sbjct: 694 SNDGATIINLLDIVHPAAKTL 714
>SB_25097| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 118
Score = 66.5 bits (155), Expect = 2e-11
Identities = 30/66 (45%), Positives = 47/66 (71%)
Frame = +2
Query: 245 PCR*TLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAI 424
P ++++I+++QD EVGDGTTSV+ILAGE + +PF+E+ +HP +I A R A I
Sbjct: 17 PAAKSMIEISRTQDEEVGDGTTSVIILAGEFMSVAEPFLEQQMHPTQIIAAYRLAMDDMI 76
Query: 425 EKIKEQ 442
+ +K+Q
Sbjct: 77 DILKQQ 82
>SB_25096| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 315
Score = 66.5 bits (155), Expect = 2e-11
Identities = 30/66 (45%), Positives = 47/66 (71%)
Frame = +2
Query: 245 PCR*TLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAI 424
P ++++I+++QD EVGDGTTSV+ILAGE + +PF+E+ +HP +I A R A I
Sbjct: 214 PAAKSMIEISRTQDEEVGDGTTSVIILAGEFMSVAEPFLEQQMHPTQIIAAYRLAMDDMI 273
Query: 425 EKIKEQ 442
+ +K+Q
Sbjct: 274 DILKQQ 279
>SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
Length = 531
Score = 64.5 bits (150), Expect = 8e-11
Identities = 35/95 (36%), Positives = 54/95 (56%)
Frame = +2
Query: 224 EATGYHSPCR*TLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVR 403
++ G +P LV+++K QD EVGDGTTSV +L E+LK + V +HP+ ++ R
Sbjct: 69 KSIGIDNPAAKILVELSKVQDDEVGDGTTSVTVLTSELLKEAEKLVSCKIHPQTIVAGWR 128
Query: 404 TASRLAIEKIKEQAVKIDNKSPEEQRDLLLKCAST 508
+ + A EK E A + PE+ R+ L+ A T
Sbjct: 129 KSVK-AAEKALEAAAVDHSSDPEKFREDLMNIART 162
Score = 59.3 bits (137), Expect = 3e-09
Identities = 27/76 (35%), Positives = 49/76 (64%), Gaps = 2/76 (2%)
Frame = +3
Query: 42 ILLLREGTDQTQGKPQLVSNINACQLVVDAVRTTLGPRGMDKLI--VDHNGKAVISNDGA 215
+ +L +G ++ + + +S+ + D V++TLGP+GMDK++ NG ++NDGA
Sbjct: 6 VSILNQGAEEERAETARLSSFVGAIAIGDLVKSTLGPKGMDKILQSFGQNGNIQVTNDGA 65
Query: 216 TIMKLLDIIHPAARLL 263
TI+K + I +PAA++L
Sbjct: 66 TILKSIGIDNPAAKIL 81
Score = 37.1 bits (82), Expect = 0.014
Identities = 15/31 (48%), Positives = 23/31 (74%)
Frame = +1
Query: 490 IEVCINTMSSKLIHQQKDHFSKIVVDAVLSL 582
+ + T+SSK++ Q +DHF+K+ VDAVL L
Sbjct: 157 MNIARTTLSSKILVQHRDHFAKLAVDAVLRL 187
>SB_4934| Best HMM Match : NAD_binding_2 (HMM E-Value=4.8)
Length = 186
Score = 62.1 bits (144), Expect = 4e-10
Identities = 31/56 (55%), Positives = 41/56 (73%), Gaps = 2/56 (3%)
Frame = +3
Query: 81 KPQLV--SNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDII 242
KPQ + +NI A + V DA+RT+LGP+GMDK+I NG I+NDGATI KL+D +
Sbjct: 21 KPQEIRMTNITAAKAVADAIRTSLGPKGMDKMIQGGNGDVTITNDGATI-KLIDTV 75
>SB_57454| Best HMM Match : DUF924 (HMM E-Value=1)
Length = 144
Score = 60.9 bits (141), Expect = 1e-09
Identities = 33/80 (41%), Positives = 47/80 (58%)
Frame = +2
Query: 269 IAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAV 448
++K QD EVGDGTTSV +LA E+LK + V +HP+ ++ R + + A EK E A
Sbjct: 2 LSKVQDDEVGDGTTSVTVLASELLKEAEKLVSCKIHPQTIVAGWRKSVK-AAEKALEAAA 60
Query: 449 KIDNKSPEEQRDLLLKCAST 508
+ PE+ RD L+ A T
Sbjct: 61 VDHSSDPEKFRDDLMNIART 80
Score = 37.1 bits (82), Expect = 0.014
Identities = 15/31 (48%), Positives = 23/31 (74%)
Frame = +1
Query: 490 IEVCINTMSSKLIHQQKDHFSKIVVDAVLSL 582
+ + T+SSK++ Q +DHF+K+ VDAVL L
Sbjct: 75 MNIARTTLSSKILVQHRDHFAKLAVDAVLRL 105
>SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 762
Score = 60.1 bits (139), Expect = 2e-09
Identities = 33/80 (41%), Positives = 49/80 (61%)
Frame = +2
Query: 269 IAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAV 448
+A +QD GDGTTS V++ GE+LK+ +V EG+HPR++ A + A+E ++E V
Sbjct: 182 VATAQDDITGDGTTSNVMIIGELLKQADLYVSEGLHPRLVTEGFEVAKKKALEVLEE--V 239
Query: 449 KIDNKSPEEQRDLLLKCAST 508
K+ S E RD L+ A T
Sbjct: 240 KV---SREMDRDTLINVAKT 256
Score = 29.1 bits (62), Expect = 3.7
Identities = 13/40 (32%), Positives = 25/40 (62%)
Frame = +1
Query: 490 IEVCINTMSSKLIHQQKDHFSKIVVDAVLSLDTPLLPLDM 609
I V ++ +K+ + D +++VVDAVL++ P P+D+
Sbjct: 251 INVAKTSLRTKVRTELADLLTEVVVDAVLTIRKPKKPIDL 290
>SB_3351| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 175
Score = 59.7 bits (138), Expect = 2e-09
Identities = 27/32 (84%), Positives = 29/32 (90%)
Frame = +3
Query: 618 QKGSGGALEDSFLVPGVAFKKTFSYAGFEMQP 713
+K SGGALEDS L+ GVAFKKTFSYAGFEMQP
Sbjct: 67 KKVSGGALEDSMLIEGVAFKKTFSYAGFEMQP 98
Score = 56.4 bits (130), Expect = 2e-08
Identities = 32/53 (60%), Positives = 39/53 (73%), Gaps = 1/53 (1%)
Frame = +1
Query: 472 GTKRSPIEVCINT-MSSKLIHQQKDHFSKIVVDAVLSLDTPLLPLDMIGIKKV 627
G R +E C T +SSKLI QK+ F+K+VVDAV+ LD LLPLDMIG+KKV
Sbjct: 18 GEMRQLLERCAATALSSKLIATQKEFFAKMVVDAVMMLD-ELLPLDMIGMKKV 69
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +2
Query: 419 AIEKIKEQAVKIDNKSPEEQRDLLLKCAST 508
AI++IKE AV + E R LL +CA+T
Sbjct: 1 AIKRIKELAVHVKKNDAGEMRQLLERCAAT 30
>SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
Length = 505
Score = 58.8 bits (136), Expect = 4e-09
Identities = 34/93 (36%), Positives = 54/93 (58%), Gaps = 6/93 (6%)
Frame = +2
Query: 260 LVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKE 439
+V+++KSQD E+GDGTT VV+LAG +L+ + ++ G+HP + A+++A+E +
Sbjct: 89 MVELSKSQDNEIGDGTTGVVVLAGALLEHAEQLLDWGIHPIRIADGYELAAKIALEHMDS 148
Query: 440 QA----VKIDNKSPEEQRDL--LLKCASTRCHR 520
A V DNK Q + L +RCHR
Sbjct: 149 IADNFPVDKDNKESLIQTAMTTLGSKIVSRCHR 181
Score = 58.4 bits (135), Expect = 5e-09
Identities = 23/56 (41%), Positives = 42/56 (75%)
Frame = +3
Query: 96 SNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDIIHPAARLL 263
S+I A + V ++T+LGP+GMDK++V +G+ ++NDGATI+ ++++ H A+L+
Sbjct: 34 SHILAARAVASILKTSLGPKGMDKMMVSPDGEVTVTNDGATILGMMEVDHQIAKLM 89
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +1
Query: 478 KRSPIEVCINTMSSKLIHQQKDHFSKIVVDAVLSL 582
K S I+ + T+ SK++ + ++I VDAVLS+
Sbjct: 160 KESLIQTAMTTLGSKIVSRCHRPLAEIAVDAVLSV 194
>SB_56262| Best HMM Match : Cpn60_TCP1 (HMM E-Value=6.6e-15)
Length = 563
Score = 36.3 bits (80), Expect = 0.025
Identities = 14/54 (25%), Positives = 31/54 (57%)
Frame = +3
Query: 102 INACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDIIHPAARLL 263
+ CQ ++ + GP G+D ++ +G +I+N G+ I++ L + +P R++
Sbjct: 6 LQTCQNFERILKKSFGPNGLDVMLRSSSGNILITNSGSMILESLTMGNPTERMI 59
>SB_49248| Best HMM Match : Cpn60_TCP1 (HMM E-Value=1.6)
Length = 278
Score = 35.1 bits (77), Expect = 0.057
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = +3
Query: 120 VVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDI 239
+ DAV TLGP+G + +I G I+ DG T+ K +++
Sbjct: 79 LADAVAVTLGPKGKNVIIEQSFGGPKITKDGVTVAKAIEL 118
Score = 31.1 bits (67), Expect = 0.93
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +2
Query: 266 DIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPR 382
D+A + + E GDGTT+ +LA I V +G +P+
Sbjct: 132 DVANNTNEEAGDGTTTATVLARSIATEGFLHVSKGANPQ 170
>SB_30876| Best HMM Match : Ribosomal_S16 (HMM E-Value=7.1)
Length = 131
Score = 31.5 bits (68), Expect = 0.70
Identities = 17/35 (48%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Frame = +1
Query: 481 RSPIEVCINT-MSSKLIHQQKDHFSKIVVDAVLSL 582
R I NT +SSKLI QQ D F+ ++VDAV+++
Sbjct: 10 RDCIVSAANTALSSKLIGQQGDFFANMIVDAVMAV 44
>SB_29096| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 41
Score = 31.1 bits (67), Expect = 0.93
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +2
Query: 329 GEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQ 442
GE + +PF+E+ +HP +I A R A I+ +K+Q
Sbjct: 2 GEFMSVAEPFLEQQMHPTQIIAAYRLAMDDMIDILKQQ 39
>SB_48461| Best HMM Match : zf-CCHC (HMM E-Value=0.0016)
Length = 327
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +2
Query: 119 CCRCGQNHPGSPW-YGQADCRSQWKGGYIKRWC 214
C RCG+NHP S + +A C K G+I C
Sbjct: 92 CYRCGKNHPPSKCRFKEATCHYCKKKGHIVAKC 124
>SB_40686| Best HMM Match : rve (HMM E-Value=0.00016)
Length = 1586
Score = 28.7 bits (61), Expect = 4.9
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = -2
Query: 704 LKASVTESFLESHTRYQERVFKSSTGTFLIPIMSRGRSGVSKDRTAST 561
+ A+V E + + + RYQ+R KSS G + R G S+ +T+ T
Sbjct: 1208 MTAAVAEKYQQDYGRYQQRRQKSSIGKLKV-----AREGPSQSKTSPT 1250
>SB_41690| Best HMM Match : DSL (HMM E-Value=0)
Length = 2798
Score = 28.3 bits (60), Expect = 6.5
Identities = 10/30 (33%), Positives = 12/30 (40%)
Frame = +2
Query: 161 GQADCRSQWKGGYIKRWCNDHEATGYHSPC 250
G DC W GG +C H + H C
Sbjct: 1128 GSKDCHDGWYGGTCSIYCLPHNGSSGHYDC 1157
>SB_6378| Best HMM Match : Keratin_B2 (HMM E-Value=0.1)
Length = 269
Score = 28.3 bits (60), Expect = 6.5
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +2
Query: 104 QCLSTCCRCGQNHPGSPWYGQADCRSQWKGGYIKRWCNDH 223
QC + C+ G++ GSP +ADC GG ++ C H
Sbjct: 145 QCCRSVCKVGRDCVGSPCSSRADC-----GGPFEQSCCGH 179
>SB_3214| Best HMM Match : Keratin_B2 (HMM E-Value=0.096)
Length = 191
Score = 28.3 bits (60), Expect = 6.5
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +2
Query: 104 QCLSTCCRCGQNHPGSPWYGQADCRSQWKGGYIKRWCNDH 223
QC + C+ G++ GSP +ADC GG ++ C H
Sbjct: 67 QCCRSVCKVGRDCVGSPCSSRADC-----GGPFEQSCCGH 101
>SB_56859| Best HMM Match : rve (HMM E-Value=4.8e-35)
Length = 1671
Score = 27.9 bits (59), Expect = 8.6
Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Frame = +2
Query: 26 QNATANTFTEGGNGPDAGQAPARLQHQCLSTCCRCGQN-HPGSPWYGQADCRSQWKGGYI 202
Q+A + + + +P + C RCG+N HP + +A C K G+I
Sbjct: 353 QSAPSTLSSTSASVKKVSSSPLPRSKSEIKECYRCGKNHHPSKCRFKEATCHYCKKKGHI 412
Query: 203 KRWC 214
C
Sbjct: 413 VAKC 416
>SB_53400| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1130
Score = 27.9 bits (59), Expect = 8.6
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Frame = +2
Query: 371 VHPRVLIRAVRTASRLAIEKIKEQAVKIDNKSPEEQRD---LLLKCAS 505
V P + + R A R+ K + DNK P+E+ D L KCAS
Sbjct: 863 VRPTYMYKHCRLACRVCTPVKKHEGPPCDNKDPDEECDHWAKLGKCAS 910
>SB_22952| Best HMM Match : EGF_2 (HMM E-Value=2e-23)
Length = 300
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +2
Query: 107 CLSTCCRCGQNHPGSPWYGQADCRSQWKGGYIKRWC 214
C TC C N SP+ GQ +C S + G ++ C
Sbjct: 142 CQGTC-DCKNNATCSPFTGQCNCTSGFTGDRCEKQC 176
>SB_41314| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1388
Score = 27.9 bits (59), Expect = 8.6
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +2
Query: 89 ARLQHQCLSTCCRCGQNHPGSPWYGQADCRSQWKGGYIKRWCNDHEAT 232
+RLQH+C++ C CG++ SP + +W Y CN + T
Sbjct: 412 SRLQHKCVNLCYGCGES-DCSPLVPPPEQDHRWDWKYCPE-CNRYFRT 457
>SB_34182| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 242
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 81 KPQLVSNINACQLVVDAVRTTLGPRGMD 164
K L+S I C LV +A +T+G +G D
Sbjct: 26 KKDLISEIRHCYLVSNAYPSTVGAKGFD 53
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,901,658
Number of Sequences: 59808
Number of extensions: 480090
Number of successful extensions: 1426
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1424
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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