Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20707
         (714 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    24   1.2  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    23   3.8  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    23   3.8  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    23   3.8  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = -3

Query: 364 FNKRLQPLQNFTGQYHYRGGSIANLGILRLCNIHK 260
           +NK ++P+QN T + H   G    L  ++L N+++
Sbjct: 38  YNKLIRPVQNMTEKVHVNFG----LAFVQLINVNE 68


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 665 TRYQERVFKSSTGTFLIPIM 606
           TR Q  V  SS G+F IP++
Sbjct: 191 TRRQGYVIYSSLGSFFIPLL 210


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 665 TRYQERVFKSSTGTFLIPIM 606
           TR Q  V  SS G+F IP++
Sbjct: 191 TRRQGYVIYSSLGSFFIPLL 210


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 665 TRYQERVFKSSTGTFLIPIM 606
           TR Q  V  SS G+F IP++
Sbjct: 191 TRRQGYVIYSSLGSFFIPLL 210


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,643
Number of Sequences: 438
Number of extensions: 4128
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)