Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20707
(714 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g11830.1 68416.m01450 chaperonin, putative similar to SWISS-P... 128 3e-30
At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit / TCP... 74 8e-14
At3g18190.1 68416.m02314 chaperonin, putative similar to SWISS-P... 73 2e-13
At5g20890.1 68418.m02481 chaperonin, putative similar to SWISS-P... 72 4e-13
At3g03960.1 68416.m00415 chaperonin, putative similar to SWISS-P... 68 5e-12
At5g26360.1 68418.m03151 chaperonin, putative similar to SWISS-P... 67 9e-12
At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit, pu... 61 8e-10
At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit, pu... 61 8e-10
At5g16070.1 68418.m01878 chaperonin, putative similar to SWISS-P... 52 5e-07
At3g02530.1 68416.m00241 chaperonin, putative similar to SWISS-P... 52 5e-07
At2g28000.1 68415.m03393 RuBisCO subunit binding-protein alpha s... 36 0.020
At5g18820.1 68418.m02236 chaperonin, putative similar to SWISS-P... 34 0.081
At1g55490.2 68414.m06348 RuBisCO subunit binding-protein beta su... 34 0.081
At1g55490.1 68414.m06347 RuBisCO subunit binding-protein beta su... 34 0.081
At5g56500.1 68418.m07051 chaperonin, putative similar to SWISS-P... 34 0.11
At2g33210.1 68415.m04069 chaperonin, putative similar to SWISS-P... 34 0.11
At3g23990.1 68416.m03013 chaperonin (CPN60) (HSP60) identical to... 33 0.14
At3g13860.1 68416.m01751 chaperonin, putative similar to SWISS-P... 33 0.14
At3g13470.1 68416.m01695 chaperonin, putative similar SWISS-PROT... 33 0.19
At1g26230.1 68414.m03200 chaperonin, putative similar to SWISS-P... 33 0.25
At4g14180.1 68417.m02189 expressed protein ; expression supporte... 31 1.0
At3g49710.1 68416.m05435 pentatricopeptide (PPR) repeat-containi... 31 1.0
At1g67760.1 68414.m07732 T-complex protein 1 epsilon subunit, pu... 30 1.3
At4g01880.1 68417.m00246 expressed protein contains Pfam PF05206... 29 3.1
At4g16530.1 68417.m02502 expressed protein contains Pfam profile... 29 4.0
At2g39910.1 68415.m04905 expressed protein 29 4.0
At5g64910.1 68418.m08165 expressed protein ; expression support... 28 5.3
At1g16560.3 68414.m01985 Per1-like family protein contains Pfam ... 28 7.1
At1g16560.2 68414.m01984 Per1-like family protein contains Pfam ... 28 7.1
At1g16560.1 68414.m01983 Per1-like family protein contains Pfam ... 28 7.1
At5g02910.1 68418.m00234 F-box family protein similar to ribosom... 27 9.3
At3g28340.1 68416.m03540 galactinol synthase, putative 27 9.3
>At3g11830.1 68416.m01450 chaperonin, putative similar to
SWISS-PROT:P80313 T-complex protein 1, eta subunit
(TCP-1-eta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 557
Score = 128 bits (310), Expect = 3e-30
Identities = 61/81 (75%), Positives = 68/81 (83%)
Frame = +3
Query: 21 SSKMQPQILLLREGTDQTQGKPQLVSNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVI 200
+S MQPQI+LL+EGTD +QGK QLVSNINAC V D VRTTLGPRGMDKLI D G I
Sbjct: 2 ASMMQPQIILLKEGTDTSQGKAQLVSNINACTAVGDVVRTTLGPRGMDKLIHDDKGSVTI 61
Query: 201 SNDGATIMKLLDIIHPAARLL 263
SNDGATIMKLLDI+HPAA++L
Sbjct: 62 SNDGATIMKLLDIVHPAAKIL 82
Score = 115 bits (277), Expect = 3e-26
Identities = 57/88 (64%), Positives = 69/88 (78%)
Frame = +2
Query: 245 PCR*TLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAI 424
P LVDIAKSQD+EVGDGTT+VV+LA E LK KPF+E+GVH + LIR+ RTAS LAI
Sbjct: 77 PAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLKEAKPFIEDGVHAQNLIRSYRTASTLAI 136
Query: 425 EKIKEQAVKIDNKSPEEQRDLLLKCAST 508
K+KE AV I+ KS EE++ LL KCA+T
Sbjct: 137 AKVKELAVSIEGKSVEEKKGLLAKCAAT 164
Score = 53.2 bits (122), Expect = 2e-07
Identities = 24/32 (75%), Positives = 26/32 (81%)
Frame = +3
Query: 618 QKGSGGALEDSFLVPGVAFKKTFSYAGFEMQP 713
+K GG + DSFLV GVAFKKTFSYAGFE QP
Sbjct: 201 KKVPGGNMRDSFLVDGVAFKKTFSYAGFEQQP 232
Score = 39.9 bits (89), Expect = 0.002
Identities = 21/41 (51%), Positives = 31/41 (75%)
Frame = +1
Query: 508 TMSSKLIHQQKDHFSKIVVDAVLSLDTPLLPLDMIGIKKVP 630
T+SSKLI +K+ F+ +VVDAV+++ L++IGIKKVP
Sbjct: 165 TLSSKLIGGEKEFFATMVVDAVMAIGND-DRLNLIGIKKVP 204
>At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit /
TCP-1-alpha / chaperonin (CCT1) identical to
SWISS-PROT:P28769- T-complex protein 1, alpha subunit
(TCP-1-alpha) [Arabidopsis thaliana]
Length = 545
Score = 74.1 bits (174), Expect = 8e-14
Identities = 33/73 (45%), Positives = 51/73 (69%)
Frame = +3
Query: 66 DQTQGKPQLVSNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDIIH 245
D+ G+ N+ ACQ V + V+T+LGP G+DK++VD G I+NDGATI+++L++ H
Sbjct: 13 DRQSGQDVRTQNVMACQAVSNIVKTSLGPVGLDKMLVDDIGDVTITNDGATILRMLEVEH 72
Query: 246 PAARLLWILQSLK 284
PAA++L L L+
Sbjct: 73 PAAKVLVELAELQ 85
Score = 64.5 bits (150), Expect = 7e-11
Identities = 37/88 (42%), Positives = 51/88 (57%)
Frame = +2
Query: 245 PCR*TLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAI 424
P LV++A+ QD EVGDGTTSVVI+A E+LKR V +HP +I R A R +
Sbjct: 73 PAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMRESC 132
Query: 425 EKIKEQAVKIDNKSPEEQRDLLLKCAST 508
+ I+E K+ K + + L+ CA T
Sbjct: 133 KYIEE---KLVTKVEKLGKVPLINCAKT 157
Score = 31.9 bits (69), Expect = 0.43
Identities = 17/33 (51%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = +1
Query: 487 PIEVCINT-MSSKLIHQQKDHFSKIVVDAVLSL 582
P+ C T MSSKLI D F+ +VV+AVLS+
Sbjct: 150 PLINCAKTSMSSKLISGDSDFFANLVVEAVLSV 182
>At3g18190.1 68416.m02314 chaperonin, putative similar to
SWISS-PROT:P50991- T-complex protein 1, delta subunit
(TCP-1-delta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 536
Score = 72.9 bits (171), Expect = 2e-13
Identities = 30/56 (53%), Positives = 46/56 (82%)
Frame = +3
Query: 96 SNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDIIHPAARLL 263
+NIN+ + V DAVRT+LGP+GMDK+I NG+ +I+NDGATI+ ++++ PAA++L
Sbjct: 32 ANINSARAVSDAVRTSLGPKGMDKMISTANGEVIITNDGATILNKMEVLQPAAKML 87
Score = 64.1 bits (149), Expect = 9e-11
Identities = 34/88 (38%), Positives = 53/88 (60%)
Frame = +2
Query: 245 PCR*TLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAI 424
P LV+++KSQD+ GDGTT+VV++AG +LK + + G+HP V+ ++ A AI
Sbjct: 82 PAAKMLVELSKSQDSAAGDGTTTVVVIAGALLKECQSLLTNGIHPTVISDSLHKACGKAI 141
Query: 425 EKIKEQAVKIDNKSPEEQRDLLLKCAST 508
+ + AV ++ RD L+K AST
Sbjct: 142 DILTAMAVPVE----LTDRDSLVKSAST 165
>At5g20890.1 68418.m02481 chaperonin, putative similar to
SWISS-PROT:P78371- T-complex protein 1, beta subunit
(TCP-1-beta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 527
Score = 71.7 bits (168), Expect = 4e-13
Identities = 42/90 (46%), Positives = 55/90 (61%), Gaps = 1/90 (1%)
Frame = +2
Query: 242 SPCR*TLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLA 421
+P LVDI+K QD EVGDGTTSVV+LAGE+L+ + V +HP +I R AS A
Sbjct: 73 NPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVASKIHPMTIIAGYRMASECA 132
Query: 422 IEKIKEQAVKIDNK-SPEEQRDLLLKCAST 508
+ ++ IDNK + E+ R LLK A T
Sbjct: 133 RNALLKRV--IDNKDNAEKFRSDLLKIAMT 160
Score = 54.4 bits (125), Expect = 7e-08
Identities = 27/74 (36%), Positives = 48/74 (64%), Gaps = 2/74 (2%)
Frame = +3
Query: 48 LLREGTDQTQGKPQLVSNINACQLVVDAVRTTLGPRGMDKLIVD-HNGKAV-ISNDGATI 221
+ ++ + +G+ +++ + D V++TLGP+GMDK++ G AV ++NDGATI
Sbjct: 6 IFKDDASEEKGERARMASFVGAMAISDLVKSTLGPKGMDKILQSTGRGHAVTVTNDGATI 65
Query: 222 MKLLDIIHPAARLL 263
+K L I +PAA++L
Sbjct: 66 LKSLHIDNPAAKVL 79
Score = 35.1 bits (77), Expect = 0.047
Identities = 19/52 (36%), Positives = 31/52 (59%)
Frame = +1
Query: 490 IEVCINTMSSKLIHQQKDHFSKIVVDAVLSLDTPLLPLDMIGIKKVPVELLK 645
+++ + T+ SK++ Q K+HF+++ VDAV L L+ I I K P LK
Sbjct: 155 LKIAMTTLCSKILSQDKEHFAEMAVDAVFRLKGS-TNLEAIQIIKKPGGSLK 205
>At3g03960.1 68416.m00415 chaperonin, putative similar to
SWISS-PROT:P42932- T-complex protein 1, theta subunit
(TCP-1-theta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 549
Score = 68.1 bits (159), Expect = 5e-12
Identities = 34/81 (41%), Positives = 53/81 (65%), Gaps = 3/81 (3%)
Frame = +3
Query: 30 MQPQIL--LLREGTDQTQGKPQ-LVSNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVI 200
MQP + +L+EG G + ++ NI AC+ + RT+LGP GM+K++++H K +
Sbjct: 6 MQPYGIQSMLKEGYRHLSGLDEAVIKNIEACKELSTITRTSLGPNGMNKMVINHLDKLFV 65
Query: 201 SNDGATIMKLLDIIHPAARLL 263
+ND ATI+ L+I HPAA+LL
Sbjct: 66 TNDAATIVNELEIQHPAAKLL 86
Score = 45.6 bits (103), Expect = 3e-05
Identities = 25/74 (33%), Positives = 39/74 (52%)
Frame = +2
Query: 245 PCR*TLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAI 424
P LV AK+Q E+GDG + AGE+L+ + + G+HP +I A A+
Sbjct: 81 PAAKLLVLAAKAQQEEIGDGANLTISFAGELLQNAEELIRMGLHPSEIISGYTKAVSKAV 140
Query: 425 EKIKEQAVKIDNKS 466
E I EQ V+ +++
Sbjct: 141 E-ILEQLVETGSET 153
>At5g26360.1 68418.m03151 chaperonin, putative similar to
SWISS-PROT:P50143- T-complex protein 1, gamma subunit
(TCP-1-gamma) [Xenopus laevis]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 555
Score = 67.3 bits (157), Expect = 9e-12
Identities = 31/76 (40%), Positives = 46/76 (60%)
Frame = +3
Query: 30 MQPQILLLREGTDQTQGKPQLVSNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISND 209
M +L+L + + G NI A + V D +RTTLGPR M K+++D G V++ND
Sbjct: 1 MHAPVLVLSDSLKRESGSKVHHGNIQASKAVADIIRTTLGPRSMLKMLLDAGGGIVVTND 60
Query: 210 GATIMKLLDIIHPAAR 257
G I++ LD+ HPAA+
Sbjct: 61 GNAILRELDVAHPAAK 76
Score = 66.5 bits (155), Expect = 2e-11
Identities = 32/89 (35%), Positives = 54/89 (60%)
Frame = +2
Query: 245 PCR*TLVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAI 424
P ++++++++QD EVGDGTTSV++LAGE+L + F+E+ HP V+ RA A +I
Sbjct: 73 PAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEAFLEKNYHPTVICRAYIKALEDSI 132
Query: 425 EKIKEQAVKIDNKSPEEQRDLLLKCASTR 511
+ + A+ ID + L+ C T+
Sbjct: 133 AVLDKIAMSIDINDRSQVLGLVKSCIGTK 161
>At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 459
Score = 60.9 bits (141), Expect = 8e-10
Identities = 25/66 (37%), Positives = 46/66 (69%)
Frame = +2
Query: 260 LVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKE 439
+V++++SQD E+GDGTT VV++AG +L++ + ++ G+HP + ASR+A+E ++
Sbjct: 11 MVELSRSQDYEIGDGTTGVVVMAGALLEQAERQLDRGIHPIRIAEGYEMASRVAVEHLER 70
Query: 440 QAVKID 457
A K +
Sbjct: 71 IAQKFE 76
Score = 32.7 bits (71), Expect = 0.25
Identities = 21/70 (30%), Positives = 42/70 (60%), Gaps = 4/70 (5%)
Frame = +1
Query: 490 IEVCINTMSSKLIHQQKDHFSKIVVDAVLS---LDTPLLPLDMIGIK-KVPVELLKTRSW 657
++ C+ T+SSK++++ K ++I V AVL+ L+ + LD+I ++ KV +L T
Sbjct: 86 VQTCMTTLSSKIVNRCKRSLAEIAVKAVLAVADLERRDVNLDLIKVEGKVGGKLEDTELI 145
Query: 658 YLVWLSRKLS 687
Y + + + +S
Sbjct: 146 YGILIDKDMS 155
>At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 535
Score = 60.9 bits (141), Expect = 8e-10
Identities = 25/66 (37%), Positives = 46/66 (69%)
Frame = +2
Query: 260 LVDIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKE 439
+V++++SQD E+GDGTT VV++AG +L++ + ++ G+HP + ASR+A+E ++
Sbjct: 87 MVELSRSQDYEIGDGTTGVVVMAGALLEQAERQLDRGIHPIRIAEGYEMASRVAVEHLER 146
Query: 440 QAVKID 457
A K +
Sbjct: 147 IAQKFE 152
Score = 54.8 bits (126), Expect = 5e-08
Identities = 28/75 (37%), Positives = 49/75 (65%), Gaps = 2/75 (2%)
Frame = +3
Query: 45 LLLREGTDQTQ--GKPQLVSNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISNDGAT 218
++LRE +T+ G +NI A + V +R++LGP+GMDK++ +G I+NDGAT
Sbjct: 13 IILREQDQKTRLRGIDAQKANIAAGKAVARILRSSLGPKGMDKMLQGPDGDITITNDGAT 72
Query: 219 IMKLLDIIHPAARLL 263
I++ +D+ + A+L+
Sbjct: 73 ILEQMDVDNQIAKLM 87
Score = 32.7 bits (71), Expect = 0.25
Identities = 21/70 (30%), Positives = 42/70 (60%), Gaps = 4/70 (5%)
Frame = +1
Query: 490 IEVCINTMSSKLIHQQKDHFSKIVVDAVLS---LDTPLLPLDMIGIK-KVPVELLKTRSW 657
++ C+ T+SSK++++ K ++I V AVL+ L+ + LD+I ++ KV +L T
Sbjct: 162 VQTCMTTLSSKIVNRCKRSLAEIAVKAVLAVADLERRDVNLDLIKVEGKVGGKLEDTELI 221
Query: 658 YLVWLSRKLS 687
Y + + + +S
Sbjct: 222 YGILIDKDMS 231
>At5g16070.1 68418.m01878 chaperonin, putative similar to
SWISS-PROT:P80317 T-complex protein 1, zeta subunit
(TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 535
Score = 51.6 bits (118), Expect = 5e-07
Identities = 23/52 (44%), Positives = 34/52 (65%)
Frame = +2
Query: 272 AKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIE 427
A +QD GDGTTS VI GE++K+ + ++EG+HPRVL+ A R ++
Sbjct: 80 AVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQ 131
Score = 41.9 bits (94), Expect = 4e-04
Identities = 18/54 (33%), Positives = 35/54 (64%)
Frame = +3
Query: 102 INACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDIIHPAARLL 263
INA + + D +++ LGP+G K++V +G ++ DG T++K + I +P A ++
Sbjct: 23 INAAKGLQDVLKSNLGPKGTIKMLVGGSGDIKLTKDGNTLLKEMQIQNPTAIMI 76
>At3g02530.1 68416.m00241 chaperonin, putative similar to
SWISS-PROT:P80317- T-complex protein 1, zeta subunit
(TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 535
Score = 51.6 bits (118), Expect = 5e-07
Identities = 23/52 (44%), Positives = 34/52 (65%)
Frame = +2
Query: 272 AKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIE 427
A +QD GDGTTS VI GE++K+ + ++EG+HPRVL+ A R ++
Sbjct: 80 AVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQ 131
Score = 41.9 bits (94), Expect = 4e-04
Identities = 18/54 (33%), Positives = 35/54 (64%)
Frame = +3
Query: 102 INACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDIIHPAARLL 263
INA + + D +++ LGP+G K++V +G ++ DG T++K + I +P A ++
Sbjct: 23 INAAKGLQDVLKSNLGPKGTIKMLVGGSGDIKLTKDGNTLLKEMQIQNPTAIMI 76
>At2g28000.1 68415.m03393 RuBisCO subunit binding-protein alpha
subunit, chloroplast / 60 kDa chaperonin alpha subunit /
CPN-60 alpha identical to SWISS-PROT:P21238- RuBisCO
subunit binding-protein alpha subunit, chloroplast
precursor (60 kDa chaperonin alpha subunit, CPN-60
alpha) [Arabidopsis thaliana]
Length = 586
Score = 36.3 bits (80), Expect = 0.020
Identities = 20/60 (33%), Positives = 33/60 (55%)
Frame = +2
Query: 266 DIAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQA 445
++A + GDGTT+ ILA EI+K V G +P L R + + IE+++++A
Sbjct: 120 EVASKTNDSAGDGTTTASILAREIIKHGLLSVTSGANPVSLKRGIDKTVQGLIEELQKKA 179
Score = 34.3 bits (75), Expect = 0.081
Identities = 15/40 (37%), Positives = 25/40 (62%)
Frame = +3
Query: 120 VVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDI 239
+ D V TLGPRG + +++D G + NDG TI + +++
Sbjct: 68 LADCVGLTLGPRGRN-VVLDEFGSPKVVNDGVTIARAIEL 106
>At5g18820.1 68418.m02236 chaperonin, putative similar to
SWISS-PROT:P08926- RuBisCO subunit binding-protein alpha
subunit, chloroplast precursor (60 kDa chaperonin alpha
subunit, CPN-60 alpha)[Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 575
Score = 34.3 bits (75), Expect = 0.081
Identities = 17/40 (42%), Positives = 26/40 (65%)
Frame = +3
Query: 120 VVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDI 239
+ DAV TLGPRG + ++ + + VI NDG TI K +++
Sbjct: 55 LADAVSITLGPRGRNVVLAEKDTIKVI-NDGVTIAKSIEL 93
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Frame = +2
Query: 257 TLV-DIAKSQDAEVGDGTTSVVILAGEILK 343
TL+ ++A + GDGTT+ +ILA E++K
Sbjct: 103 TLIQEVAIKMNESAGDGTTTAIILAREMIK 132
>At1g55490.2 68414.m06348 RuBisCO subunit binding-protein beta
subunit, chloroplast / 60 kDa chaperonin beta subunit /
CPN-60 beta identical to SWISS-PROT:P21240- RuBisCO
subunit binding-protein beta subunit, chloroplast
precursor (60 kDa chaperonin beta subunit, CPN-60 beta)
[Arabidopsis thaliana]
Length = 600
Score = 34.3 bits (75), Expect = 0.081
Identities = 16/63 (25%), Positives = 35/63 (55%)
Frame = +2
Query: 272 AKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVK 451
AK+ D GDGTT+ V+LA + V G +P ++ R + ++ + ++K+ + +
Sbjct: 134 AKTNDL-AGDGTTTSVVLAQGFIAEGVKVVAAGANPVLITRGIEKTAKALVTELKKMSKE 192
Query: 452 IDN 460
+++
Sbjct: 193 VED 195
Score = 32.7 bits (71), Expect = 0.25
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +3
Query: 120 VVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDIIHPAARL 260
+ D V TLGP+G + ++ G I NDG T+ + +++ P +
Sbjct: 78 LADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVELEDPVENI 124
>At1g55490.1 68414.m06347 RuBisCO subunit binding-protein beta
subunit, chloroplast / 60 kDa chaperonin beta subunit /
CPN-60 beta identical to SWISS-PROT:P21240- RuBisCO
subunit binding-protein beta subunit, chloroplast
precursor (60 kDa chaperonin beta subunit, CPN-60 beta)
[Arabidopsis thaliana]
Length = 600
Score = 34.3 bits (75), Expect = 0.081
Identities = 16/63 (25%), Positives = 35/63 (55%)
Frame = +2
Query: 272 AKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVK 451
AK+ D GDGTT+ V+LA + V G +P ++ R + ++ + ++K+ + +
Sbjct: 134 AKTNDL-AGDGTTTSVVLAQGFIAEGVKVVAAGANPVLITRGIEKTAKALVTELKKMSKE 192
Query: 452 IDN 460
+++
Sbjct: 193 VED 195
Score = 32.7 bits (71), Expect = 0.25
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +3
Query: 120 VVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDIIHPAARL 260
+ D V TLGP+G + ++ G I NDG T+ + +++ P +
Sbjct: 78 LADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVELEDPVENI 124
>At5g56500.1 68418.m07051 chaperonin, putative similar to
SWISS-PROT:P08927- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 597
Score = 33.9 bits (74), Expect = 0.11
Identities = 15/63 (23%), Positives = 36/63 (57%)
Frame = +2
Query: 272 AKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVK 451
+K+ D GDGTT+ V+LA ++ V G +P ++ R + ++ + ++K+ + +
Sbjct: 130 SKTNDL-AGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTTKALVAELKKMSKE 188
Query: 452 IDN 460
+++
Sbjct: 189 VED 191
Score = 32.7 bits (71), Expect = 0.25
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +3
Query: 120 VVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDIIHPAARL 260
+ D V TLGP+G + ++ G I NDG T+ + +++ P +
Sbjct: 74 LADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVELEDPVENI 120
>At2g33210.1 68415.m04069 chaperonin, putative similar to
SWISS-PROT:Q05046- chaperonin CPN60-2, mitochondrial
precursor (HSP60-2) [Cucurbita maxima]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 585
Score = 33.9 bits (74), Expect = 0.11
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = +3
Query: 120 VVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLD 236
+ DAV+ T+GP+G + +I G ++ DG T+ K ++
Sbjct: 54 LADAVKVTMGPKGRNVIIEQSWGAPKVTKDGVTVAKSIE 92
>At3g23990.1 68416.m03013 chaperonin (CPN60) (HSP60) identical to
SWISS-PROT:P29197- chaperonin CPN60, mitochondrial
precursor (HSP60) [Arabidopsis thaliana]
Length = 577
Score = 33.5 bits (73), Expect = 0.14
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = +3
Query: 120 VVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLD 236
+ DAV+ T+GP+G + +I G ++ DG T+ K ++
Sbjct: 53 LADAVKVTMGPKGRNVVIEQSWGAPKVTKDGVTVAKSIE 91
>At3g13860.1 68416.m01751 chaperonin, putative similar to
SWISS-PROT:P29197- chaperonin CPN60, mitochondrial
precursor (HSP60) [Arabidopsis thaliana] ; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 572
Score = 33.5 bits (73), Expect = 0.14
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +3
Query: 120 VVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMK 227
V +AV+ T+GP+G + +I G I+ DG T+ K
Sbjct: 53 VAEAVKVTMGPKGRNVIIESSYGGPKITKDGVTVAK 88
Score = 29.9 bits (64), Expect = 1.8
Identities = 21/69 (30%), Positives = 31/69 (44%)
Frame = +2
Query: 269 IAKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAV 448
+A + + GDGTT +L IL V GV+ L + A + +K +AV
Sbjct: 107 VASATNKVAGDGTTCATVLTQAILIEGCKSVAAGVNVMDLRVGINMAIAAVVSDLKSRAV 166
Query: 449 KIDNKSPEE 475
I +PEE
Sbjct: 167 MI--STPEE 173
>At3g13470.1 68416.m01695 chaperonin, putative similar
SWISS-PROT:P21240- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Arabidopsis thaliana]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 596
Score = 33.1 bits (72), Expect = 0.19
Identities = 16/63 (25%), Positives = 34/63 (53%)
Frame = +2
Query: 272 AKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVK 451
AK+ D GDGTT+ V+LA + V G +P ++ R + ++ + ++K + +
Sbjct: 130 AKTNDL-AGDGTTTSVVLAQGFIAEGVKVVAAGANPVLITRGIEKTAKALVNELKLMSKE 188
Query: 452 IDN 460
+++
Sbjct: 189 VED 191
Score = 32.7 bits (71), Expect = 0.25
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +3
Query: 120 VVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDIIHPAARL 260
+ D V TLGP+G + ++ G I NDG T+ + +++ P +
Sbjct: 74 LADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVELEDPVENI 120
>At1g26230.1 68414.m03200 chaperonin, putative similar to
SWISS-PROT:P08927- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 611
Score = 32.7 bits (71), Expect = 0.25
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = +3
Query: 117 LVVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDIIHP 248
+V + TLGP+G + ++ + G I NDG T++K +++ P
Sbjct: 61 MVAKLLGVTLGPKGRNVVLQNKYGPPRIVNDGETVLKEIELEDP 104
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/63 (23%), Positives = 34/63 (53%)
Frame = +2
Query: 272 AKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVK 451
AK+ D GDG+T+ +ILA ++ + G +P + R + ++ + ++K + +
Sbjct: 118 AKTNDL-AGDGSTTSIILAHGLITEGIKVISAGTNPIQVARGIEKTTKALVLELKSMSRE 176
Query: 452 IDN 460
I++
Sbjct: 177 IED 179
>At4g14180.1 68417.m02189 expressed protein ; expression supported by
MPSS
Length = 1268
Score = 30.7 bits (66), Expect = 1.0
Identities = 13/26 (50%), Positives = 21/26 (80%)
Frame = +1
Query: 634 ELLKTRSWYLVWLSRKLSVTLALRCS 711
E+LKT SWY +++ ++SV+LA+ CS
Sbjct: 1068 EMLKTSSWYR-FIAEEMSVSLAMPCS 1092
>At3g49710.1 68416.m05435 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 721
Score = 30.7 bits (66), Expect = 1.0
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = -3
Query: 355 RLQPLQNFTGQYHYRGGSIANLGILRLCNIHKSLAAG*MISSSFMIVAP 209
+L+ + F Y+ GS+A +L C HK++A ++ M++ P
Sbjct: 498 KLEEAERFIDAMPYKPGSVAWAALLGACRKHKNMALAERAANELMVMQP 546
>At1g67760.1 68414.m07732 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative similar to chaperonin containing TCP-1 (CCT)
epsilon subunit [Tetrahymena pyriformis] GI:15824416,
SP|P80316 T-complex protein 1, epsilon subunit
(TCP-1-epsilon) (CCT-epsilon) {Mus musculus}
Length = 142
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Frame = +3
Query: 45 LLLREGTDQTQ--GKPQLVSNINACQLVVDAVRTTLGPRGMDK 167
++LRE +T+ G +NI+A + V +R++LGP+GM+K
Sbjct: 13 IILREQDQKTRLKGIDAQKANISAGKAVARILRSSLGPKGMEK 55
>At4g01880.1 68417.m00246 expressed protein contains Pfam PF05206:
Protein of unknown function (DUF715)
Length = 453
Score = 29.1 bits (62), Expect = 3.1
Identities = 28/113 (24%), Positives = 47/113 (41%), Gaps = 8/113 (7%)
Frame = -3
Query: 577 TGQHQQQS*RSGPSVDESVSMTSC*C-TLQ*EISLFLRRLIINFHSLLLDFLNGQS*RCS 401
+GQ Q + + +E M SC T + + +L + FH L+ + C
Sbjct: 75 SGQRFYQKGINAGNDEEEEKMGSCSLVTSEMKRNLLYSMSVSKFHQLIKKIEDVHGGICK 134
Query: 400 DCSDQNTR---VNTFFNKRLQPLQNFTGQYHYRGGSIAN----LGILRLCNIH 263
D D N +FNK + F ++ + GSI +G+L+ CNI+
Sbjct: 135 DIEDSYLSPEACNIWFNKEIDRKLPFQEKHVLQQGSILGNLEEIGVLKRCNIN 187
>At4g16530.1 68417.m02502 expressed protein contains Pfam profile
PF04510: Family of unknown function (DUF577)
Length = 774
Score = 28.7 bits (61), Expect = 4.0
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = +2
Query: 338 LKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVKIDNKSPEEQ 478
LKR P E+G V+ AV ++ + +E ++ + K + + EE+
Sbjct: 616 LKRASPEAEKGKDEAVVAAAVVKSTAVVVESVESEEPKTEKEEDEER 662
>At2g39910.1 68415.m04905 expressed protein
Length = 436
Score = 28.7 bits (61), Expect = 4.0
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 201 SNDGATIMKLLDIIHPAARLLWILQSLKMPRLAME 305
S+D T++ +L+ + RL WI S PRL E
Sbjct: 341 SDDAETVLLVLERLETVVRLTWIRHSPVFPRLVDE 375
>At5g64910.1 68418.m08165 expressed protein ; expression supported
by MPSS
Length = 487
Score = 28.3 bits (60), Expect = 5.3
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +1
Query: 538 KDHFSKIVVDAVLSLDTPLLPLDMIGIKKVPVEL 639
KD ++V V+ +D+P+ P D IG+ V E+
Sbjct: 245 KDENKDVLVPVVVCIDSPIPPSDEIGVASVQGEV 278
>At1g16560.3 68414.m01985 Per1-like family protein contains Pfam
profile PF04080: Per1-like
Length = 342
Score = 27.9 bits (59), Expect = 7.1
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Frame = +2
Query: 107 CLSTCC--RCGQNHPGSPWYGQADCRSQWK 190
C+ C +C + G PWY Q QWK
Sbjct: 43 CVGQLCFPQCNSSSDGGPWYIQEPLYLQWK 72
>At1g16560.2 68414.m01984 Per1-like family protein contains Pfam
profile PF04080: Per1-like
Length = 342
Score = 27.9 bits (59), Expect = 7.1
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Frame = +2
Query: 107 CLSTCC--RCGQNHPGSPWYGQADCRSQWK 190
C+ C +C + G PWY Q QWK
Sbjct: 43 CVGQLCFPQCNSSSDGGPWYIQEPLYLQWK 72
>At1g16560.1 68414.m01983 Per1-like family protein contains Pfam
profile PF04080: Per1-like
Length = 342
Score = 27.9 bits (59), Expect = 7.1
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Frame = +2
Query: 107 CLSTCC--RCGQNHPGSPWYGQADCRSQWK 190
C+ C +C + G PWY Q QWK
Sbjct: 43 CVGQLCFPQCNSSSDGGPWYIQEPLYLQWK 72
>At5g02910.1 68418.m00234 F-box family protein similar to ribosomal
RNA apurinic site specific lyase [Triticum aestivum]
GI:6505722; contains F-box domain Pfam:PF00646
Length = 458
Score = 27.5 bits (58), Expect = 9.3
Identities = 19/69 (27%), Positives = 32/69 (46%)
Frame = -1
Query: 666 HQVPGTSLQELHRNLFDSNHVERQKWSVQRQDSINNNLREVVLLLMNQFR*HRVDAHFNR 487
H V +S+ ELH N + H Q+ + +DS+ E + +L ++ + A F
Sbjct: 339 HTVKCSSISELHLNDYLRKHSLNQRQCWRSKDSVFPGSLETISMLASKHAESNLVALFME 398
Query: 486 RSLCSSGDL 460
R L S+ L
Sbjct: 399 RLLKSTKSL 407
>At3g28340.1 68416.m03540 galactinol synthase, putative
Length = 365
Score = 27.5 bits (58), Expect = 9.3
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = +3
Query: 576 VFGHSTSASRHDWNQKGSGG 635
VFG A H WNQ G GG
Sbjct: 282 VFGGDIEAIDHQWNQHGLGG 301
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,114,855
Number of Sequences: 28952
Number of extensions: 340763
Number of successful extensions: 1058
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 1008
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1056
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1545769616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -