Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20706
(620 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0588 + 5278013-5278153,5278641-5278782,5278923-5279019,527... 123 1e-28
06_01_0285 - 2090427-2090558,2091045-2091119,2091334-2091407,209... 50 1e-06
02_05_0884 - 32483735-32483866,32484417-32484491,32484707-324847... 49 3e-06
05_05_0306 - 23977543-23977614,23977709-23977799,23978296-239783... 34 0.10
01_06_1091 + 34464923-34465026,34465124-34465163,34465245-344653... 34 0.10
09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,353... 29 3.0
10_08_0118 + 14948636-14949667,14949893-14949953,14951226-14951977 28 6.9
10_08_0055 - 14505747-14506934 28 6.9
09_02_0479 - 9753161-9753171,9755260-9755547,9755883-9756222 28 6.9
03_01_0090 + 718746-719998,720089-720161,720198-720254 28 6.9
11_01_0361 + 2772193-2772334,2773457-2773587,2773872-2773985,277... 27 9.1
02_05_0642 + 30576158-30576289,30576436-30576503,30577167-305774... 27 9.1
02_01_0748 + 5566073-5567620 27 9.1
>05_01_0588 +
5278013-5278153,5278641-5278782,5278923-5279019,
5279130-5279199,5279284-5279388,5279531-5279629,
5280062-5280152,5280238-5280311
Length = 272
Score = 123 bits (297), Expect = 1e-28
Identities = 57/85 (67%), Positives = 66/85 (77%)
Frame = +1
Query: 256 GADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAADTEMTTQSVASQLELQRLHTGRTV 435
GADTRATE +V+DKNC+KIHY+A N+YCCGAGTAADTE T V+SQL+L R TGR
Sbjct: 53 GADTRATEGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYATGRES 112
Query: 436 PVETAATLLKRMLFRYQGHIGAALV 510
V T+ TLLK LF YQGH+ AALV
Sbjct: 113 RVVTSLTLLKSHLFSYQGHVSAALV 137
Score = 67.7 bits (158), Expect = 7e-12
Identities = 28/37 (75%), Positives = 33/37 (89%)
Frame = +3
Query: 510 LGGVDRTGPHIYCIYPHGSVDKLPYATMGSGSLAAMA 620
LGGVD TGPH++ +YPHGS D LP+ATMGSGSLAAM+
Sbjct: 138 LGGVDVTGPHLHTVYPHGSTDTLPFATMGSGSLAAMS 174
Score = 54.4 bits (125), Expect = 7e-08
Identities = 23/43 (53%), Positives = 30/43 (69%)
Frame = +2
Query: 125 PVPGFSFENFQRNAFLAQKGFPAPKATKTGTTIVGIIYADGVI 253
P GFS++N RNA L +KG P KTGTTIVG+++ DGV+
Sbjct: 9 PKGGFSYDNCARNAMLVEKGLKMPGFLKTGTTIVGLVFQDGVV 51
>06_01_0285 -
2090427-2090558,2091045-2091119,2091334-2091407,
2091792-2091903,2092036-2092108,2092291-2092346,
2092679-2092755,2093384-2093525
Length = 246
Score = 50.0 bits (114), Expect = 1e-06
Identities = 23/84 (27%), Positives = 47/84 (55%)
Frame = +1
Query: 259 ADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAADTEMTTQSVASQLELQRLHTGRTVP 438
AD+R + V+++ KI L N+Y C +G+AADT++ ++ V L + G+
Sbjct: 41 ADSRTSTGMYVANRASDKITQLTDNVYVCRSGSAADTQVISEYVRYFLHQHTIQLGQPAT 100
Query: 439 VETAATLLKRMLFRYQGHIGAALV 510
V+ AA L++ + ++ + + A ++
Sbjct: 101 VKVAANLIRLLAYQNKNMLQAGMI 124
>02_05_0884 -
32483735-32483866,32484417-32484491,32484707-32484780,
32485180-32485291,32485476-32485548,32485674-32485729,
32486046-32486122,32486799-32486940
Length = 246
Score = 49.2 bits (112), Expect = 3e-06
Identities = 23/84 (27%), Positives = 46/84 (54%)
Frame = +1
Query: 259 ADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAADTEMTTQSVASQLELQRLHTGRTVP 438
AD+R + V+++ KI L N+Y C +G+AADT++ + V L + G+
Sbjct: 41 ADSRTSTGMYVANRASDKITQLTDNVYICRSGSAADTQVISDYVRYFLHQHTIQLGQPAT 100
Query: 439 VETAATLLKRMLFRYQGHIGAALV 510
V+ AA L++ + ++ + + A ++
Sbjct: 101 VKVAANLIRLLAYQNKNMLQAGMI 124
>05_05_0306 -
23977543-23977614,23977709-23977799,23978296-23978361,
23978399-23978479,23979130-23979176,23979408-23979492,
23979570-23979656,23979728-23979801,23980083-23980166,
23980259-23980298,23980386-23980489
Length = 276
Score = 33.9 bits (74), Expect = 0.10
Identities = 19/40 (47%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +3
Query: 498 GCSG-LGGVDRTGPHIYCIYPHGSVDKLPYATMGSGSLAA 614
GC LGG DR GP +Y I P G K A +G G AA
Sbjct: 133 GCGVILGGYDRDGPQLYMIEPSGLSYKYFGAALGKGRQAA 172
>01_06_1091 +
34464923-34465026,34465124-34465163,34465245-34465328,
34465457-34465480,34465582-34465655,34465726-34465812,
34465922-34466006,34466215-34466261,34467048-34467113,
34468307-34468397,34468477-34468548
Length = 257
Score = 33.9 bits (74), Expect = 0.10
Identities = 19/40 (47%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +3
Query: 498 GCSG-LGGVDRTGPHIYCIYPHGSVDKLPYATMGSGSLAA 614
GC LGG DR GP +Y I P G K A +G G AA
Sbjct: 141 GCGVILGGYDRDGPQLYMIEPSGVSYKYFGAALGKGRQAA 180
>09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,
3536083-3536226,3536974-3537375,3537499-3537721,
3537830-3542368,3542480-3542599,3543005-3543038,
3543922-3544102,3544198-3544815,3545022-3551098,
3551139-3551304,3551508-3551614,3552056-3552178,
3553417-3553642
Length = 5100
Score = 29.1 bits (62), Expect = 3.0
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = -3
Query: 552 KCSKYEDRFCQHLPNQSSPYMTLIAKQHSFQQCGSSFYWYS 430
K Y+D C ++ N + ++ A++ CGS ++YS
Sbjct: 2992 KLDGYQDVLCSYISNAHTTFVRRYARRLFLHLCGSKTHYYS 3032
>10_08_0118 + 14948636-14949667,14949893-14949953,14951226-14951977
Length = 614
Score = 27.9 bits (59), Expect = 6.9
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -3
Query: 540 YEDRFCQHLPNQSSPYMTLIAKQH 469
YED+ C H+ S+ M ++A++H
Sbjct: 285 YEDKLCNHIDTGSASTMLVLAEKH 308
>10_08_0055 - 14505747-14506934
Length = 395
Score = 27.9 bits (59), Expect = 6.9
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -3
Query: 537 EDRFCQHLPNQSSPYMTLIAKQHS 466
EDR C+H+ +S + +A+QHS
Sbjct: 313 EDRLCKHIDGESVATILALAEQHS 336
>09_02_0479 - 9753161-9753171,9755260-9755547,9755883-9756222
Length = 212
Score = 27.9 bits (59), Expect = 6.9
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -1
Query: 461 SSVAAVSTGTVRPVCKRCNS 402
S V +V+T T+RP+C RC +
Sbjct: 79 SPVESVTTATLRPICFRCTN 98
>03_01_0090 + 718746-719998,720089-720161,720198-720254
Length = 460
Score = 27.9 bits (59), Expect = 6.9
Identities = 19/63 (30%), Positives = 28/63 (44%)
Frame = +2
Query: 155 QRNAFLAQKGFPAPKATKTGTTIVGIIYADGVIQELTQEPLKIQLSQTKTAKKSTI*HPT 334
QRN ++ K FP T G TIV Y G + + ++ + T + I PT
Sbjct: 348 QRNLCVSSKAFP----TVVGDTIVFHHYQQGYLAQYHLRSGTLEPASDGTIAEYAIPSPT 403
Query: 335 CIV 343
CI+
Sbjct: 404 CII 406
>11_01_0361 +
2772193-2772334,2773457-2773587,2773872-2773985,
2774303-2774459,2774577-2775000,2775238-2776030,
2776182-2776241,2776952-2777593
Length = 820
Score = 27.5 bits (58), Expect = 9.1
Identities = 18/64 (28%), Positives = 28/64 (43%)
Frame = +1
Query: 220 NCWYNIRRRRYTGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAADTEMTTQSVASQ 399
N W ++ RR + T A+EN S+ H A+ G +D E QS S+
Sbjct: 81 NLWQHVWRRHAMNSQTNASENNAASN------HLSANGGNGSKTGEHSDEESDAQSSGSK 134
Query: 400 LELQ 411
E++
Sbjct: 135 REVE 138
>02_05_0642 +
30576158-30576289,30576436-30576503,30577167-30577487,
30578318-30579146
Length = 449
Score = 27.5 bits (58), Expect = 9.1
Identities = 10/33 (30%), Positives = 16/33 (48%)
Frame = +3
Query: 441 RNCCHTAETNAVSLSRSYRGCSGLGGVDRTGPH 539
+ C H +E + S+ +R C G+ R G H
Sbjct: 171 KGCKHCSEIHVGSVGHPFRTCKGMSSDKRRGQH 203
>02_01_0748 + 5566073-5567620
Length = 515
Score = 27.5 bits (58), Expect = 9.1
Identities = 8/19 (42%), Positives = 15/19 (78%)
Frame = -2
Query: 271 LLCQLLYNAVCVYYTNNCS 215
LLC+ ++ + C+YYT +C+
Sbjct: 487 LLCKSVFPSYCIYYTAHCT 505
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,122,550
Number of Sequences: 37544
Number of extensions: 368802
Number of successful extensions: 857
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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