Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20706
(620 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_10931| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.004
SB_22053| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_29730| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_50916| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_8505| Best HMM Match : CitD (HMM E-Value=0.91) 28 5.3
SB_37108| Best HMM Match : AMP-binding (HMM E-Value=2e-09) 27 9.3
SB_22107| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
SB_11848| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
SB_3851| Best HMM Match : TSP_1 (HMM E-Value=3.7e-24) 27 9.3
SB_18786| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
>SB_10931| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 467
Score = 38.7 bits (86), Expect = 0.004
Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Frame = +1
Query: 262 DTRATENTVVSDKNCQKIHYLASNMYCCG--AGTAADTEMTTQSVASQLELQRLHTGRTV 435
D+RAT + ++ + +K+ + N Y G AG AAD + +A Q + L +
Sbjct: 45 DSRATAGSYIASQTVKKV--IEINPYLLGTMAGGAADCSFWERLLAKQCRIYELRNKERI 102
Query: 436 PVETAATLLKRMLFRYQGHIGAALV 510
V A+ +L M++ Y+G +G ++V
Sbjct: 103 SVAAASKILANMVYYYKG-MGLSMV 126
>SB_22053| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1670
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +1
Query: 364 DTEMTTQSVASQLELQRLHT--GRTVPVETAATLLKRMLFRYQGH 492
D + V S E+ RLHT GR+ PVE LLK+ L + + H
Sbjct: 250 DKKDEDSKVMSSQEVSRLHTPQGRSTPVEPHLQLLKQALKQVKPH 294
>SB_29730| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4275
Score = 29.5 bits (63), Expect = 2.3
Identities = 21/67 (31%), Positives = 32/67 (47%)
Frame = +2
Query: 32 RGITFKGVRFKLKFQ*NLSNHEMASALVPEIPVPGFSFENFQRNAFLAQKGFPAPKATKT 211
+G+ KG L++ SN E + L +P+ +FE FQRN F QK P
Sbjct: 729 KGLKRKGSIVLLRYILQDSNFEDLAGLAL-LPLANNTFEVFQRNGFGFQKKVYMPSDQHP 787
Query: 212 GTTIVGI 232
G+ + G+
Sbjct: 788 GSLLRGL 794
>SB_50916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1681
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = +1
Query: 343 CGAGTAADTEMTTQSVASQLELQR 414
C GTAA T +T QSVAS ++++R
Sbjct: 637 CKRGTAALTNVTKQSVASVVDIER 660
>SB_8505| Best HMM Match : CitD (HMM E-Value=0.91)
Length = 909
Score = 28.3 bits (60), Expect = 5.3
Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 3/77 (3%)
Frame = +1
Query: 307 QKIHYLAS-NMYCCGAGTAADTEMTTQSVASQLELQR--LHTGRTVPVETAATLLKRMLF 477
QK+H + CC + LE+ +H+G +PVE L+ +L
Sbjct: 82 QKLHLVYEITALCCAFNPKNLLQKVVDLCVESLEMYNGDVHSGDGLPVEVTLDLVNYLLK 141
Query: 478 RYQGHIGAALVWEVLTE 528
+ GH G ++ E
Sbjct: 142 QESGHDGVTMLGPTFEE 158
>SB_37108| Best HMM Match : AMP-binding (HMM E-Value=2e-09)
Length = 488
Score = 27.5 bits (58), Expect = 9.3
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = -3
Query: 591 WLHMVIYLQIHEDKCSKYEDRFCQHLPNQSSPYMTLIAKQHSFQQC 454
W H + H+D C K DR + QS Y++L + + QC
Sbjct: 328 WFHTGDIGEFHDDGCLKIIDRKKDLVKLQSGEYVSLGKVEAALAQC 373
>SB_22107| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 383
Score = 27.5 bits (58), Expect = 9.3
Identities = 15/34 (44%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Frame = +3
Query: 441 RNCCHTAETNAVSLSRSYRGCSGL--GGVDRTGP 536
R C + V SRS GC GL GG R GP
Sbjct: 38 RGACGACRSARVPSSRSVVGCGGLRAGGPGRRGP 71
>SB_11848| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 113
Score = 27.5 bits (58), Expect = 9.3
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +1
Query: 250 YTGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAA 363
YTG A +N + QK + L +N + GA TAA
Sbjct: 21 YTGVVPEAEQNAGTAQPKRQKPNLLMANQWVAGAQTAA 58
>SB_3851| Best HMM Match : TSP_1 (HMM E-Value=3.7e-24)
Length = 429
Score = 27.5 bits (58), Expect = 9.3
Identities = 20/75 (26%), Positives = 31/75 (41%)
Frame = +3
Query: 381 TICCFTIGVAALTYWTYCTSRNCCHTAETNAVSLSRSYRGCSGLGGVDRTGPHIYCIYPH 560
T+ C +A T S C T++ + ++ CS G+ T + CI +
Sbjct: 176 TVTCSDKDTSACDLRTKPQSSTVCGTSQECPKWIIGNWSQCSRTCGIGITSREVQCILGN 235
Query: 561 GSVDKLPYATMGSGS 605
S LPYA+ S S
Sbjct: 236 NS---LPYASCDSNS 247
>SB_18786| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1056
Score = 27.5 bits (58), Expect = 9.3
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = +1
Query: 349 AGTAADTEMTTQSVASQLELQRLHTGRTVPVETAATLLKRMLFRYQGHI 495
+G + +TT SVASQL+ + +T RT+ + AT + M+ GH+
Sbjct: 753 SGQVPSSGLTTSSVASQLQ-TKTNTVRTISRPSTATTVS-MVRTLPGHL 799
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,703,082
Number of Sequences: 59808
Number of extensions: 418580
Number of successful extensions: 1162
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1075
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1161
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1536271375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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