Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20706
(620 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z99709-4|CAB16855.1| 277|Caenorhabditis elegans Hypothetical pr... 92 3e-19
AC006672-3|AAK84540.1| 239|Caenorhabditis elegans Proteasome be... 44 9e-05
Z81564-1|CAB04567.1| 284|Caenorhabditis elegans Hypothetical pr... 41 6e-04
Z77661-2|CAB01184.4| 265|Caenorhabditis elegans Hypothetical pr... 31 0.88
U41993-7|AAA83450.2| 733|Caenorhabditis elegans Temporarily ass... 29 2.7
Z77657-8|CAB01151.2| 386|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z98877-2|CAB11570.1| 907|Caenorhabditis elegans Hypothetical pr... 28 6.2
U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of pr... 28 6.2
U43316-1|AAC46993.1| 525|Caenorhabditis elegans transmembrane r... 28 6.2
AC006736-2|AAF60493.1| 529|Caenorhabditis elegans Abnormal cell... 28 6.2
AC006736-1|AAF60492.1| 525|Caenorhabditis elegans Abnormal cell... 28 6.2
Z99171-7|CAB16312.1| 188|Caenorhabditis elegans Hypothetical pr... 27 8.2
U41991-7|AAA83347.1| 255|Caenorhabditis elegans Hypothetical pr... 27 8.2
>Z99709-4|CAB16855.1| 277|Caenorhabditis elegans Hypothetical
protein C47B2.4 protein.
Length = 277
Score = 92.3 bits (219), Expect = 3e-19
Identities = 41/85 (48%), Positives = 58/85 (68%)
Frame = +1
Query: 256 GADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAADTEMTTQSVASQLELQRLHTGRTV 435
GAD+RAT +++DK+C+K+H L ++Y CGAGTAAD + T+ ++ L L L+TGR
Sbjct: 61 GADSRATAGNIIADKHCEKVHKLTESIYACGAGTAADLDQVTKMLSGNLRLLELNTGRKA 120
Query: 436 PVETAATLLKRMLFRYQGHIGAALV 510
V TA K+ LF YQG+IGA L+
Sbjct: 121 RVITALRQAKQHLFNYQGYIGAYLL 145
Score = 41.9 bits (94), Expect = 4e-04
Identities = 17/36 (47%), Positives = 23/36 (63%)
Frame = +3
Query: 510 LGGVDRTGPHIYCIYPHGSVDKLPYATMGSGSLAAM 617
+GGVD TGPH+Y +G+ P+ GSGS AA+
Sbjct: 146 IGGVDPTGPHLYMCSANGTTMAFPFTAQGSGSYAAI 181
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/39 (43%), Positives = 23/39 (58%)
Frame = +2
Query: 137 FSFENFQRNAFLAQKGFPAPKATKTGTTIVGIIYADGVI 253
F F N RN + + G APK T TGTTIV + + G++
Sbjct: 21 FDFSNCIRNQAMCKMGGKAPKLTSTGTTIVAVAFKGGLV 59
>AC006672-3|AAK84540.1| 239|Caenorhabditis elegans Proteasome beta
subunit protein 1 protein.
Length = 239
Score = 44.0 bits (99), Expect = 9e-05
Identities = 17/85 (20%), Positives = 44/85 (51%)
Frame = +1
Query: 256 GADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAADTEMTTQSVASQLELQRLHTGRTV 435
G D+R + + ++ + KI + NM C +G+AADT+ +++ + + V
Sbjct: 38 GTDSRTSAGSFITSRATNKITPITDNMVVCRSGSAADTQAIADIAKYHIDVYTMTENKPV 97
Query: 436 PVETAATLLKRMLFRYQGHIGAALV 510
+ ++ + ++ L+ Y+ + A+++
Sbjct: 98 TIYRSSQIFRQFLYNYREQLSASVL 122
>Z81564-1|CAB04567.1| 284|Caenorhabditis elegans Hypothetical
protein K05C4.1 protein.
Length = 284
Score = 41.1 bits (92), Expect = 6e-04
Identities = 23/76 (30%), Positives = 35/76 (46%)
Frame = +1
Query: 262 DTRATENTVVSDKNCQKIHYLASNMYCCGAGTAADTEMTTQSVASQLELQRLHTGRTVPV 441
D+RA+ +S K+ KI + M AG AAD + T+ VA L L ++ V
Sbjct: 88 DSRASSGEYISSKSVMKILDIGDRMVATMAGGAADCQFWTRIVAKYCTLYELREKTSITV 147
Query: 442 ETAATLLKRMLFRYQG 489
A+ L+ Y+G
Sbjct: 148 SAASKYFANTLYGYRG 163
Score = 28.7 bits (61), Expect = 3.5
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +3
Query: 504 SGLGGVDRTGPHIYCIYPHGSVDKLPYATMGSGSLAA 614
S + G D+ GP I+ + G +L ++GSGSL A
Sbjct: 170 SMVAGYDKKGPQIFKVDSEGDRCQLKVCSVGSGSLNA 206
>Z77661-2|CAB01184.4| 265|Caenorhabditis elegans Hypothetical
protein F40G12.2 protein.
Length = 265
Score = 30.7 bits (66), Expect = 0.88
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = +1
Query: 286 VVSDKNCQKIHYLASNMYCC 345
V S +NC+K+H+L+SN + C
Sbjct: 210 VKSQENCEKVHFLSSNFWNC 229
>U41993-7|AAA83450.2| 733|Caenorhabditis elegans Temporarily
assigned gene nameprotein 153, isoform b protein.
Length = 733
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +1
Query: 226 WYNIRRRRYTGADTRATENTVVSD 297
W N+R + TGADT ++NT SD
Sbjct: 33 WKNLRPQTATGADTNLSKNTKSSD 56
>Z77657-8|CAB01151.2| 386|Caenorhabditis elegans Hypothetical
protein F08H9.7 protein.
Length = 386
Score = 28.7 bits (61), Expect = 3.5
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = +3
Query: 423 WTYCTSRNCCHTAETNAVSLSRSYRGCSGLGG 518
WT+ T+ + C+T S S + C +GG
Sbjct: 29 WTFSTNTSYCYTKSAQYFSFSEAANYCQSIGG 60
>Z98877-2|CAB11570.1| 907|Caenorhabditis elegans Hypothetical
protein Y69H2.2 protein.
Length = 907
Score = 27.9 bits (59), Expect = 6.2
Identities = 16/61 (26%), Positives = 23/61 (37%)
Frame = -2
Query: 373 FQCQLLFLLHNNTCWMLNSGFFGSFCLRQLYFQWLLCQLLYNAVCVYYTNNCSTGLGGFG 194
F+C L L N C +N +G C+ C+ + + YT C G G
Sbjct: 404 FKCDCLNLYSGNRCEEINRCNYGDPCVNG------KCETTVDGITTNYTCTCDDGWTGAN 457
Query: 193 C 191
C
Sbjct: 458 C 458
>U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of
presynaptic morphologyprotein 1 protein.
Length = 3766
Score = 27.9 bits (59), Expect = 6.2
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -3
Query: 312 FLAVFV*DNCIFSGSCVSSCITPSAYIIPTIVVPVLVALG 193
F V V C+ S C+ + TPS +P I+ +LV +G
Sbjct: 3154 FSPVVVQRQCLNSLECIFASFTPSNVEVPKIIRNLLVVVG 3193
>U43316-1|AAC46993.1| 525|Caenorhabditis elegans transmembrane
receptor protein.
Length = 525
Score = 27.9 bits (59), Expect = 6.2
Identities = 11/55 (20%), Positives = 24/55 (43%)
Frame = -3
Query: 597 IPWLHMVIYLQIHEDKCSKYEDRFCQHLPNQSSPYMTLIAKQHSFQQCGSSFYWY 433
+ WL ++ + + +C K + C LP + + L+ + S++ S Y
Sbjct: 10 VTWLLLLFVIGVDGQRCQKVDHEMCNDLPYNLTSFPNLV-DEESWKDASESILTY 63
>AC006736-2|AAF60493.1| 529|Caenorhabditis elegans Abnormal cell
migration protein1, isoform b protein.
Length = 529
Score = 27.9 bits (59), Expect = 6.2
Identities = 11/55 (20%), Positives = 24/55 (43%)
Frame = -3
Query: 597 IPWLHMVIYLQIHEDKCSKYEDRFCQHLPNQSSPYMTLIAKQHSFQQCGSSFYWY 433
+ WL ++ + + +C K + C LP + + L+ + S++ S Y
Sbjct: 10 VTWLLLLFVIGVDGQRCQKVDHEMCNDLPYNLTSFPNLV-DEESWKDASESILTY 63
>AC006736-1|AAF60492.1| 525|Caenorhabditis elegans Abnormal cell
migration protein1, isoform a protein.
Length = 525
Score = 27.9 bits (59), Expect = 6.2
Identities = 11/55 (20%), Positives = 24/55 (43%)
Frame = -3
Query: 597 IPWLHMVIYLQIHEDKCSKYEDRFCQHLPNQSSPYMTLIAKQHSFQQCGSSFYWY 433
+ WL ++ + + +C K + C LP + + L+ + S++ S Y
Sbjct: 10 VTWLLLLFVIGVDGQRCQKVDHEMCNDLPYNLTSFPNLV-DEESWKDASESILTY 63
>Z99171-7|CAB16312.1| 188|Caenorhabditis elegans Hypothetical
protein F47G4.8 protein.
Length = 188
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -2
Query: 229 TNNCSTGLGGFGCRKP 182
T+ CS GLGGFG +P
Sbjct: 96 TSQCSPGLGGFGVYRP 111
>U41991-7|AAA83347.1| 255|Caenorhabditis elegans Hypothetical
protein C42D4.3 protein.
Length = 255
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +3
Query: 237 TQTALYRS*HKSH*KYSCLRQKLPKNPLFSIQHVL 341
T+TA +R + H + Q LP+NPLF++Q++L
Sbjct: 216 TETAEFRRPSQEHFRAPTSPQ-LPQNPLFAVQNLL 249
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,789,375
Number of Sequences: 27780
Number of extensions: 326793
Number of successful extensions: 896
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 896
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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