Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20705
         (761 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.           36   0.001
AY578799-1|AAT07304.1|  679|Anopheles gambiae brinker protein.         29   0.21 
AF395079-1|AAK97461.1|  371|Anopheles gambiae basic helix-loop-h...    24   4.5  
AY391745-1|AAR28995.1|  460|Anopheles gambiae putative GPCR prot...    23   7.8  

>CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.
          Length = 1664

 Score = 36.3 bits (80), Expect = 0.001
 Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
 Frame = +2

Query: 308 RTNYTLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKMGI 484
           RTNY L+    GH   V  VK++   + LAS  +  +I +W  Y+G++  + I+     +
Sbjct: 55  RTNYNLR----GHRSDVILVKWNEPYQKLASCDSSGIIFVWIKYEGRWSVELINDRNTPV 110

Query: 485 SDVAWSSD 508
           +  +WS D
Sbjct: 111 THFSWSHD 118


>AY578799-1|AAT07304.1|  679|Anopheles gambiae brinker protein.
          Length = 679

 Score = 28.7 bits (61), Expect = 0.21
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +2

Query: 197 PVPGHPAAHQTHGGPSASLSVQIHYHNLLHSQTSL 301
           P   HPA H  H  P+A+ ++  H+H+  H    L
Sbjct: 136 PSVHHPAHHPLHYQPAAAAAMHHHHHHPHHHHPGL 170


>AF395079-1|AAK97461.1|  371|Anopheles gambiae basic
           helix-loop-helix transcriptionfactor ASH protein.
          Length = 371

 Score = 24.2 bits (50), Expect = 4.5
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 197 PVPGHPAAHQTHGGPS 244
           P P H + H +HGG S
Sbjct: 220 PAPSHLSDHSSHGGTS 235


>AY391745-1|AAR28995.1|  460|Anopheles gambiae putative GPCR
           protein.
          Length = 460

 Score = 23.4 bits (48), Expect = 7.8
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = +3

Query: 48  MKKRDCAKYKTF*FVETFIYFVILCVIVIV 137
           M+K   ++ + F +++T I FV+   I++V
Sbjct: 192 MRKEYTSQMEIFNYIDTVIVFVVPFTIIVV 221


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 827,780
Number of Sequences: 2352
Number of extensions: 17741
Number of successful extensions: 37
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 79002570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)