Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20704
         (728 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     27   0.21 
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       23   3.3  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       21   7.7  
DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc gr...    21   7.7  

>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 26.6 bits (56), Expect = 0.21
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 608 DWVREDGAGHFVKMVHN 658
           DW +EDG   F+  +HN
Sbjct: 221 DWTKEDGTDKFMSHIHN 237


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -3

Query: 429 SVCLSIVNYHHQL*YH 382
           S+ + +V+YHHQL  H
Sbjct: 127 SLVIKLVDYHHQLLGH 142


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 11/29 (37%), Positives = 12/29 (41%)
 Frame = -3

Query: 465 KVFLSLTTLYTISVCLSIVNYHHQL*YHL 379
           KV +      T   C  I  Y H L YHL
Sbjct: 222 KVHIREDKRLTCPKCPFITEYKHHLEYHL 250


>DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc
           growth factor 2 protein.
          Length = 439

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 336 AVDEFVKKLIPLLSKGDIIID 398
           A+DE   KL PL  + D+I D
Sbjct: 64  AIDEETYKLTPLNEQFDVIKD 84


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,179
Number of Sequences: 336
Number of extensions: 4275
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19467635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)