Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20704
         (728 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46306| Best HMM Match : 6PGD (HMM E-Value=0)                       113   1e-25
SB_26480| Best HMM Match : EGF (HMM E-Value=0)                         30   1.7  
SB_12107| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  

>SB_46306| Best HMM Match : 6PGD (HMM E-Value=0)
          Length = 870

 Score =  113 bits (273), Expect = 1e-25
 Identities = 48/62 (77%), Positives = 52/62 (83%)
 Frame = +2

Query: 509 GPSLMPGGHPAAWPHIKEIFQAICAKANDEPCCDWVREDGAGHFVKMVHNGIEYGDMQLI 688
           GPSLMPGG   AWPHIK IFQAI AKA ++PCCDWV  DG+GHFVKMVHNGIEYGDMQ+ 
Sbjct: 184 GPSLMPGGSEKAWPHIKPIFQAIAAKAGNDPCCDWVGGDGSGHFVKMVHNGIEYGDMQVF 243

Query: 689 CE 694
            E
Sbjct: 244 DE 245



 Score = 72.1 bits (169), Expect(2) = 2e-21
 Identities = 31/48 (64%), Positives = 38/48 (79%)
 Frame = +3

Query: 363 IPLLSKGDIIIDGGNSQYLDTQKWCKELSGTGILYVGMGVSGGEDGAR 506
           +PLL  GDIIIDGGNS+Y D+ + CK L   G+L+VG GVSGGE+GAR
Sbjct: 135 VPLLESGDIIIDGGNSEYKDSMRRCKALEERGLLFVGSGVSGGEEGAR 182



 Score = 48.8 bits (111), Expect = 4e-06
 Identities = 29/51 (56%), Positives = 33/51 (64%)
 Frame = +1

Query: 109 ADIALIGLAVMGQNLILNMNDKGYVVCAFNRTVSKVEEFLKNEAKGTKVLG 261
           ADIALIGLAVM              VCA NRTV KV+ FL NEAKGT+++G
Sbjct: 31  ADIALIGLAVM--------------VCAHNRTVEKVDRFLANEAKGTRIVG 67



 Score = 48.0 bits (109), Expect(2) = 2e-21
 Identities = 21/35 (60%), Positives = 29/35 (82%)
 Frame = +3

Query: 261 ATSLDDMVSKLKRPRKIVLLVKAGFAVDEFVKKLI 365
           A SL +MVSKLK+PR++++LVKAG AVD F+  L+
Sbjct: 68  AHSLQEMVSKLKKPRRVMILVKAGSAVDAFIDHLV 102


>SB_26480| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1772

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 17/58 (29%), Positives = 24/58 (41%)
 Frame = -3

Query: 681 CISPYSIPLCTILTKWPAPSSRTQSQHGSSLALAHMAWKISFICGHAAGCPPGIKDGP 508
           C+  Y  P+C+ +   P PS    + H  SL    +  K   +C H   CP G    P
Sbjct: 279 CVQVYQ-PVCSAVMCKPLPSVNIGNYHPPSLNCDSVEQKFDQVCSHR--CPSGYHMSP 333


>SB_12107| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 255

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -1

Query: 560 LLYAAMQQDAHQASKMVLSCTIFTSTYTHSNIKYSC 453
           LLY +M     +A K++L CT   S + HS   +SC
Sbjct: 197 LLYGSMNDHYAKAFKILLRCT-SKSRFNHSTFNHSC 231


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,524,583
Number of Sequences: 59808
Number of extensions: 456705
Number of successful extensions: 1106
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1010
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1105
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)