Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20703
         (680 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha...    29   0.62 
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar...    26   5.8  
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa...    26   5.8  

>SPBC609.03 |||WD repeat protein, human IQWD1
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 29.1 bits (62), Expect = 0.62
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +2

Query: 161 KFSFEGSQNSVGVIKKYVICVVFMFA 238
           KFS +GS NS G++ +Y+ C  F  A
Sbjct: 251 KFSPDGSCNSQGILDRYITCCQFSAA 276


>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -3

Query: 93  KQKATSNSNVLHEREEHAES*NDDK-LRNTR 4
           +QKA  NS VL  +   +   NDDK +RN +
Sbjct: 537 RQKAAMNSAVLRRQSSQSSGANDDKEVRNRK 567


>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
           Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 875

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
 Frame = -3

Query: 615 HFARLPSFCHQCGEAIKSSRLESFGIQFDETTCVIPSSVMVRHAAA----ITDPFSSSHL 448
           HF +     H  G++ K  ++ S G++    TC   S++ V  A      +  PF  SH 
Sbjct: 185 HFKKEKKSKHSSGKSSKKYKVISPGLKNLGATCFFNSTLQVLCACEALHDVISPFQYSHS 244

Query: 447 SI 442
           S+
Sbjct: 245 SV 246


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,572,019
Number of Sequences: 5004
Number of extensions: 47312
Number of successful extensions: 119
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)