Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20703
         (680 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1092 - 8593414-8593776,8597750-8597931,8598080-8598152           30   1.5  
04_04_0319 + 24355275-24355401,24355504-24355603,24356271-243566...    29   3.4  
10_08_0259 + 16274430-16274747,16275180-16275242,16275329-162754...    29   4.5  
04_04_0285 - 24136865-24137000,24137554-24137611,24138142-241414...    29   4.5  
04_04_0172 + 23290421-23290519,23291564-23291677,23291783-232918...    28   6.0  
02_05_1293 - 35520733-35520963,35521696-35521878,35522040-355222...    28   6.0  

>01_01_1092 - 8593414-8593776,8597750-8597931,8598080-8598152
          Length = 205

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -1

Query: 530 MRRLVLSPPRSWYAMLPLSPIHLALRICPSSAPAQPQHLAPEHILCR 390
           M  L  SP  S    LP++P  L   + P + P+    L PE++L +
Sbjct: 111 MGTLSYSPSASSITDLPIAPYPLNYAVAPVAPPSSSSDLRPEYLLTK 157


>04_04_0319 +
           24355275-24355401,24355504-24355603,24356271-24356618,
           24356705-24356745,24356821-24356867,24358043-24358107,
           24358186-24358308,24358397-24358534,24358658-24358899,
           24358988-24359118,24359363-24359388,24359746-24359882,
           24359964-24360376,24360514-24360550,24360643-24360667,
           24360755-24360887,24361241-24361340,24362015-24362115,
           24362998-24363084
          Length = 806

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = -3

Query: 588 HQCGEAIKSSRLESFGIQFDETTCVIPSSVMVRHAAAITDPFSSSHLSI 442
           H C    K  ++ S  + F +   + P+SV VRH      P +S   S+
Sbjct: 484 HTCLYTWKEGKIRSLPVTFMDPLILYPTSVYVRHTITADTPENSCRESV 532


>10_08_0259 +
           16274430-16274747,16275180-16275242,16275329-16275424,
           16275526-16275618,16276415-16276605,16276684-16276921,
           16277805-16277900,16278324-16278404,16278532-16278939,
           16279048-16279331,16279460-16279547,16279630-16279830,
           16280032-16280118,16280119-16280238,16280536-16280708,
           16281914-16282055,16282292-16282414,16282601-16282656,
           16282735-16283038,16283154-16283283,16283491-16283549,
           16283829-16284061,16285480-16285527,16285765-16285843,
           16285925-16286169,16286338-16286722
          Length = 1446

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/55 (23%), Positives = 27/55 (49%)
 Frame = +1

Query: 505 GGDNTSRLIKLNAEALESRALDRLTTLMTERRKARKVYQEDHTKISSQFTQLSEE 669
           G D    + ++     + + +D +     +RRK RKV +ED  K++ +  +  +E
Sbjct: 330 GVDEVEEIAEVEGAVSDIKGVDEIELSEVQRRKYRKVPEEDDAKMTKRLQRHLKE 384


>04_04_0285 -
           24136865-24137000,24137554-24137611,24138142-24141480,
           24141789-24142218,24142861-24142928,24143015-24143165
          Length = 1393

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +1

Query: 496 HDRGGDNTSRLIKLNAEALESRALDRLTTLMTERRKARKVYQED 627
           HD  G  TS+L K +   LE       T+   +R+KA+KV   D
Sbjct: 506 HDESGIETSKLEKSSKSILEETQSVGHTSQQKKRKKAKKVSSVD 549


>04_04_0172 +
           23290421-23290519,23291564-23291677,23291783-23291878,
           23291955-23292039,23292262-23292317,23292432-23292510,
           23292599-23292733,23292842-23293077,23293173-23293505
          Length = 410

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -3

Query: 549 SFGIQFDETTCVIPSSVMVRHAAAITDPFSSSHLS 445
           +FG ++DE  C +       H    TDPF    LS
Sbjct: 330 AFGDKWDEEACAVLQKAFPDHEVIFTDPFHFETLS 364


>02_05_1293 -
           35520733-35520963,35521696-35521878,35522040-35522255,
           35522936-35523022,35523125-35523331,35523426-35523650,
           35523743-35523798,35524009-35524115,35524443-35525470
          Length = 779

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = +1

Query: 586 MTERRKARKVYQEDHTKISSQFTQLSEEVQ 675
           M + R+A K Y+E++  ++  F +L EE++
Sbjct: 290 MKKERRALKSYEEENNDLAGSFRELREEIK 319


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,577,042
Number of Sequences: 37544
Number of extensions: 336852
Number of successful extensions: 879
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 877
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)