Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20703
         (680 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37759| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.86 
SB_536| Best HMM Match : No HMM Matches (HMM E-Value=.)                30   2.0  
SB_45718| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_50902| Best HMM Match : HTH_7 (HMM E-Value=0.56)                    28   6.1  
SB_6911| Best HMM Match : Ank (HMM E-Value=0)                          28   8.0  
SB_42269| Best HMM Match : efhand (HMM E-Value=4.8e-05)                28   8.0  

>SB_37759| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 253

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = -3

Query: 273 IVNHPRHTKPHIAN-INTTQITYFFITPTL 187
           ++N+PRH  PHI+  + TT +T   +T TL
Sbjct: 79  VINYPRHHYPHISTLVITTLVTTTLVTTTL 108


>SB_536| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 143

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -3

Query: 603 LPSFCHQCGEAIKSSRLESFGIQFDETTCVIPSS 502
           +P FC  C   I   R   FGI   E+TC +P++
Sbjct: 1   MPYFCQICIPWIPKQRAIDFGINEFESTCFLPNT 34


>SB_45718| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 141

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 19/65 (29%), Positives = 34/65 (52%)
 Frame = +2

Query: 170 FEGSQNSVGVIKKYVICVVFMFAMCGLV*RGWFTMGYTTNGAGRAAHEALLARQDAELRL 349
           F+ +   +GV+KK+   V F+F + GL+  G+F   Y  +   ++  E  +  +D +  L
Sbjct: 69  FDNAPEKLGVVKKFHDGVFFIF-LLGLL-EGFFVPLYQFHTIPKSDDEKQIYVKDGKAEL 126

Query: 350 MEAMK 364
            E MK
Sbjct: 127 SEKMK 131


>SB_50902| Best HMM Match : HTH_7 (HMM E-Value=0.56)
          Length = 273

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
 Frame = +1

Query: 535 LNA--EALESRALDRLTTLMTERRKARKVYQEDH-TKISSQ 648
           LNA  + +E  A+D   ++ T  +  RK  QEDH  KISS+
Sbjct: 30  LNALIDKIEQLAMDHRLSVRTNAKSNRKANQEDHLMKISSE 70


>SB_6911| Best HMM Match : Ank (HMM E-Value=0)
          Length = 1961

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = +3

Query: 27  RSNFPRAPLVREER-YYWKLLFV*IYLTVK-LGFDFNSPPCNAFTLVNFLS 173
           RSNFP  P  +E R YY+ ++   ++L  + +     S P     ++ FL+
Sbjct: 271 RSNFPATPDTQEHRIYYYSIMSAALFLVARTIALFVYSKPSKHLLIIFFLA 321


>SB_42269| Best HMM Match : efhand (HMM E-Value=4.8e-05)
          Length = 901

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 18/61 (29%), Positives = 33/61 (54%)
 Frame = +1

Query: 466 WIGDSGSMAYHDRGGDNTSRLIKLNAEALESRALDRLTTLMTERRKARKVYQEDHTKISS 645
           W+GD   M+YH  GG + ++  K  A +  +    R   +  E  ++ KV+ ED+ K+S+
Sbjct: 808 WLGDVDKMSYH--GGCDVTKGTKWAANSWINVGKSREHDI--EAWESYKVFVEDYDKLSN 863

Query: 646 Q 648
           +
Sbjct: 864 K 864


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,100,704
Number of Sequences: 59808
Number of extensions: 367210
Number of successful extensions: 977
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 975
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)