Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20703
         (680 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025726-32|AAY43988.1|  230|Caenorhabditis elegans Hypothetical...    29   3.1  
Z27078-2|CAA81588.3|  788|Caenorhabditis elegans Hypothetical pr...    28   7.1  
Z27078-1|CAA81587.2|  628|Caenorhabditis elegans Hypothetical pr...    28   7.1  
L19120-1|AAA28155.1|  815|Caenorhabditis elegans kinesin heavy c...    27   9.4  
L07144-3|AAK21446.1|  815|Caenorhabditis elegans Uncoordinated p...    27   9.4  
AL021497-1|CAA16404.1|  382|Caenorhabditis elegans Hypothetical ...    27   9.4  
AB017163-1|BAA32594.1|  815|Caenorhabditis elegans kinesin Heavy...    27   9.4  

>AC025726-32|AAY43988.1|  230|Caenorhabditis elegans Hypothetical
           protein Y71G12B.32 protein.
          Length = 230

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -3

Query: 582 CGEAIKSSRLESFGIQFDETTCVIPSSVMVRH 487
           CGE  ++ RL +  I+ D+T+  IP S++  H
Sbjct: 63  CGEFFENGRLNAETIELDKTSIPIPKSLLKIH 94


>Z27078-2|CAA81588.3|  788|Caenorhabditis elegans Hypothetical
           protein K04H4.2b protein.
          Length = 788

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
 Frame = -3

Query: 600 PSFCHQCGEA----IKSSRLESFGIQFDETTCVIP---SSVMVRHAAAITDPFSSSHLSI 442
           PS   QC +     ++ S  E+F   F++ TC++P   SS+  + A+ +   FSS   S 
Sbjct: 123 PSSYLQCDQTTLRWVRKSCQENFLFNFEQQTCIVPKRMSSLSRQQASGLVCTFSSCSNSN 182

Query: 441 FC 436
            C
Sbjct: 183 PC 184


>Z27078-1|CAA81587.2|  628|Caenorhabditis elegans Hypothetical
           protein K04H4.2a protein.
          Length = 628

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
 Frame = -3

Query: 600 PSFCHQCGEA----IKSSRLESFGIQFDETTCVIP---SSVMVRHAAAITDPFSSSHLSI 442
           PS   QC +     ++ S  E+F   F++ TC++P   SS+  + A+ +   FSS   S 
Sbjct: 123 PSSYLQCDQTTLRWVRKSCQENFLFNFEQQTCIVPKRMSSLSRQQASGLVCTFSSCSNSN 182

Query: 441 FC 436
            C
Sbjct: 183 PC 184


>L19120-1|AAA28155.1|  815|Caenorhabditis elegans kinesin heavy
           chain protein.
          Length = 815

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 19/70 (27%), Positives = 33/70 (47%)
 Frame = +1

Query: 469 IGDSGSMAYHDRGGDNTSRLIKLNAEALESRALDRLTTLMTERRKARKVYQEDHTKISSQ 648
           + DS  MA  +  G +T  + +  A A     L   T  +T+  K  K Y+E+  K+  Q
Sbjct: 386 LSDSAQMAVSEVSGGSTPLMERSIAPA--PPMLTSTTGPITDEEK--KKYEEERVKLYQQ 441

Query: 649 FTQLSEEVQR 678
             +  +E+Q+
Sbjct: 442 LDEKDDEIQK 451


>L07144-3|AAK21446.1|  815|Caenorhabditis elegans Uncoordinated
           protein 116 protein.
          Length = 815

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 19/70 (27%), Positives = 33/70 (47%)
 Frame = +1

Query: 469 IGDSGSMAYHDRGGDNTSRLIKLNAEALESRALDRLTTLMTERRKARKVYQEDHTKISSQ 648
           + DS  MA  +  G +T  + +  A A     L   T  +T+  K  K Y+E+  K+  Q
Sbjct: 386 LSDSAQMAVSEVSGGSTPLMERSIAPA--PPMLTSTTGPITDEEK--KKYEEERVKLYQQ 441

Query: 649 FTQLSEEVQR 678
             +  +E+Q+
Sbjct: 442 LDEKDDEIQK 451


>AL021497-1|CAA16404.1|  382|Caenorhabditis elegans Hypothetical
           protein Y51A2D.1 protein.
          Length = 382

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/20 (70%), Positives = 14/20 (70%)
 Frame = -3

Query: 126 SRNRV*RLNKFKQKATSNSN 67
           SRN V RLNK  QKA  NSN
Sbjct: 71  SRNNVVRLNKNAQKAGRNSN 90


>AB017163-1|BAA32594.1|  815|Caenorhabditis elegans kinesin Heavy
           chain protein.
          Length = 815

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 19/70 (27%), Positives = 33/70 (47%)
 Frame = +1

Query: 469 IGDSGSMAYHDRGGDNTSRLIKLNAEALESRALDRLTTLMTERRKARKVYQEDHTKISSQ 648
           + DS  MA  +  G +T  + +  A A     L   T  +T+  K  K Y+E+  K+  Q
Sbjct: 386 LSDSAQMAVSEVSGGSTPLMERSIAPA--PPMLTSTTGPITDEEK--KKYEEERVKLYQQ 441

Query: 649 FTQLSEEVQR 678
             +  +E+Q+
Sbjct: 442 LDEKDDEIQK 451


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,684,719
Number of Sequences: 27780
Number of extensions: 280795
Number of successful extensions: 797
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 797
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)