Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20703
         (680 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   1.5  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    23   2.0  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    22   4.7  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    22   4.7  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    22   4.7  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   6.2  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   6.2  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   6.2  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   6.2  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -1

Query: 98  NSNKKQLPIVTFFTNERSTRKVRTTT 21
           N NK+Q P  T  T  +  RK  TTT
Sbjct: 776 NVNKEQSPNSTKETTPKKERKTATTT 801


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 191 VGVIKKYVICVVFMFAMCGLV*RGWFTMG 277
           +G+IK  +    F+FA+CGL   G  T+G
Sbjct: 5   MGMIKYLLFIFNFVFAVCGL---GILTLG 30


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 8/30 (26%), Positives = 13/30 (43%)
 Frame = +1

Query: 196 CDKKICDLCCVYVCNVWFSVTWVVHDGIHY 285
           CD   C    + +C +     W + D I+Y
Sbjct: 115 CDVLCCTASILNLCAIALDRYWAITDPINY 144


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 8/30 (26%), Positives = 13/30 (43%)
 Frame = +1

Query: 196 CDKKICDLCCVYVCNVWFSVTWVVHDGIHY 285
           CD   C    + +C +     W + D I+Y
Sbjct: 115 CDVLCCTASILNLCAIALDRYWAITDPINY 144


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 8/30 (26%), Positives = 13/30 (43%)
 Frame = +1

Query: 196 CDKKICDLCCVYVCNVWFSVTWVVHDGIHY 285
           CD   C    + +C +     W + D I+Y
Sbjct: 115 CDVLCCTASILNLCAIALDRYWAITDPINY 144


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -1

Query: 482 PLSPIHLALRI 450
           PL P+H ALRI
Sbjct: 158 PLIPVHFALRI 168


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -1

Query: 482 PLSPIHLALRI 450
           PL P+H ALRI
Sbjct: 158 PLIPVHFALRI 168


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -1

Query: 482 PLSPIHLALRI 450
           PL P+H ALRI
Sbjct: 209 PLIPVHFALRI 219


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -1

Query: 482 PLSPIHLALRI 450
           PL P+H ALRI
Sbjct: 158 PLIPVHFALRI 168


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,351
Number of Sequences: 438
Number of extensions: 3266
Number of successful extensions: 16
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)