Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20703
         (680 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g34245.1 68414.m04250 expressed protein                             28   6.6  
At3g08750.1 68416.m01017 F-box family protein contains F-box dom...    27   8.7  
At1g24706.1 68414.m03104 expressed protein                             27   8.7  

>At1g34245.1 68414.m04250 expressed protein
          Length = 120

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +2

Query: 200 IKKYVICVVFMFAMCGLV 253
           ++KY+ C+V +FA C LV
Sbjct: 5   VRKYMFCLVLVFAACSLV 22


>At3g08750.1 68416.m01017 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 369

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = -1

Query: 194 QHCFATPRKKIYKRKGVARWAIKVETEFDG*INSNKKQLPIVTFF-TNERSTRKVRTTTS 18
           Q C A P   I KR+ +  W        +G ++ + K   I+TF+  +E    K   T S
Sbjct: 293 QSCMACPGYSIGKRRNIRVWC-------EGSVDVDDKSYVIITFYEIDEGGVIKQIETAS 345

Query: 17  YG 12
           YG
Sbjct: 346 YG 347


>At1g24706.1 68414.m03104 expressed protein
          Length = 1781

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = +1

Query: 508 GDNTSRLIKLNAEALESRALDRLTTLMTERRKARKVYQEDHTKISSQ 648
           GD  SRLIKL    +ES+ + +   L  ER +   +++ D  KI +Q
Sbjct: 92  GDQRSRLIKLAKWLVESQTVPQ--RLFQERCEEEFLWEADMVKIKAQ 136


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,731,048
Number of Sequences: 28952
Number of extensions: 256360
Number of successful extensions: 704
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)