Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20702
(701 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc... 30 0.37
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 28 1.5
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 27 2.0
SPBC428.07 |meu6||meiotic chromosome segregation protein Meu6|Sc... 27 2.6
SPBC26H8.09c |snf59||SWI/SNF complex subunit Snf59|Schizosacchar... 27 3.4
SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb... 27 3.4
SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces pombe... 27 3.4
SPBC25H2.09 |||DUF1690 family protein|Schizosaccharomyces pombe|... 26 4.5
SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyce... 26 6.0
SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe... 26 6.0
SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak... 26 6.0
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ... 26 6.0
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc... 25 7.9
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac... 25 7.9
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ... 25 7.9
>SPAC6G9.04 |mug79||meiotically upregulated gene
Mug79|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 29.9 bits (64), Expect = 0.37
Identities = 22/105 (20%), Positives = 53/105 (50%)
Frame = +1
Query: 67 KVPEAEDKPLNVVDNLSSEQELIDQANTIKDIDNSLRANKKEVIDIPVKVIVEEIKPSLK 246
K P +E P V L+ + I +I +++ + ++ +V++ P + ++ +I+ +
Sbjct: 377 KAPTSEAPPKGHVKQLAKQLGNIYMPQSINNVEPTSHSSISKVVN-PSEKVISKIERACL 435
Query: 247 SDLKTLKCRMKMRKSRGL*SI*EIPGPRSIKSTKHRILNTTKMLK 381
+ + +KM K+ L P PR++ +T+H+I + ++ K
Sbjct: 436 AGNGNVHPSIKMEKNLEL-----NPHPRTLNATEHKINSRIQVSK 475
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 27.9 bits (59), Expect = 1.5
Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Frame = -2
Query: 553 LWYLSAEIFLEMLQAAWSSLICSVRAY---HFPIPSDTS 446
L+ L AEI LE LQ +W L C A HF I D+S
Sbjct: 3894 LFSLDAEISLEKLQNSWKRL-CQKNAILRTHFAISEDSS 3931
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 27.5 bits (58), Expect = 2.0
Identities = 26/107 (24%), Positives = 44/107 (41%)
Frame = +1
Query: 67 KVPEAEDKPLNVVDNLSSEQELIDQANTIKDIDNSLRANKKEVIDIPVKVIVEEIKPSLK 246
++ E E V+D E+EL +K +N ++ E+ P + + K
Sbjct: 646 EIEELEPVVQKVLDEEKQERELKIAERDLKKGENIMKYGD-EIRSRPARTWFQSEKDKQA 704
Query: 247 SDLKTLKCRMKMRKSRGL*SI*EIPGPRSIKSTKHRILNTTKMLKKS 387
S K + + K + E+P R+ K TK+ L+ K KKS
Sbjct: 705 SKASEAKDKKSLAKRKKQMEKEEVP--RAYKKTKNDRLSNKKSTKKS 749
>SPBC428.07 |meu6||meiotic chromosome segregation protein
Meu6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 651
Score = 27.1 bits (57), Expect = 2.6
Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 4/29 (13%)
Frame = +2
Query: 548 PKLNETLHFIKPAD----TIAAPSVEERK 622
PK ET+ I PAD ++AAP VEE+K
Sbjct: 67 PKEPETVDNIDPADDDPNSVAAPKVEEKK 95
>SPBC26H8.09c |snf59||SWI/SNF complex subunit
Snf59|Schizosaccharomyces pombe|chr 2|||Manual
Length = 515
Score = 26.6 bits (56), Expect = 3.4
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +3
Query: 294 RPLVDLRNPGPPQHQEHETQNPEHHEDA--EKIVSSVKNDINTAE 422
+P D RN GP Q + + + PE H ++ E+ + + ++ N E
Sbjct: 151 KPSGDFRNEGPKQCDDSKIEKPELHVNSKIEEPIHRIDSEHNEPE 195
>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 827
Score = 26.6 bits (56), Expect = 3.4
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = +3
Query: 327 PQHQEHETQNPEHHEDAEKIVSSVKNDIN 413
P +++ T++ E HED + V +++D N
Sbjct: 24 PNNKKSRTRSTESHEDRQAKVQKIQSDFN 52
>SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 26.6 bits (56), Expect = 3.4
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +1
Query: 316 IPGPRSIKSTKHRILNTTKMLKKSFLPSKMTLTQRK 423
+P P S+ HR LN K+ F P + T++K
Sbjct: 224 LPSPVSLSRYMHRSLNWKKLYDIGFAPFPLGSTEKK 259
>SPBC25H2.09 |||DUF1690 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 162
Score = 26.2 bits (55), Expect = 4.5
Identities = 21/85 (24%), Positives = 41/85 (48%)
Frame = +1
Query: 25 NYIRARRTRSSIPDKVPEAEDKPLNVVDNLSSEQELIDQANTIKDIDNSLRANKKEVIDI 204
NYI+ R + D++ + + + +D + E+E A TIKD SL +N ++
Sbjct: 42 NYIQKR-----VQDELKQLQLRQKKAIDAIQ-EEEWKSNAKTIKDSQGSLDSN---LLSA 92
Query: 205 PVKVIVEEIKPSLKSDLKTLKCRMK 279
+ E+++ + K LK ++K
Sbjct: 93 EFRSFQEKLEKQSSINDKELKIKLK 117
>SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 459
Score = 25.8 bits (54), Expect = 6.0
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 8/53 (15%)
Frame = +1
Query: 97 NVVDNLSSEQE--------LIDQANTIKDIDNSLRANKKEVIDIPVKVIVEEI 231
NVVD+LS EQE L DQ N + NSLR+ +P + V++I
Sbjct: 137 NVVDDLSKEQESRKESAPQLYDQINAFIEKVNSLRSG-----SVPFTITVDDI 184
>SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 727
Score = 25.8 bits (54), Expect = 6.0
Identities = 15/56 (26%), Positives = 23/56 (41%)
Frame = +3
Query: 324 PPQHQEHETQNPEHHEDAEKIVSSVKNDINTAEIALRQGFQEVSDGIGKWYARTEQ 491
PP H ++ TQ HEDA+ S + + I R ++ G + EQ
Sbjct: 609 PPLHLKNTTQTNNAHEDAQSSNLSQNHSLFYERIPQRPSYRIEKQNKGIYEDENEQ 664
>SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 708
Score = 25.8 bits (54), Expect = 6.0
Identities = 18/79 (22%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Frame = +3
Query: 294 RPLVDLRNPGPPQHQEHE--TQNPEHHEDAEKIVSSVKNDI---NTAEIALRQGFQEVSD 458
RPL++LR P P E + +N ++ + I+ S + N+ ++ GF++ ++
Sbjct: 597 RPLINLRQPKPLLRSEADCIIKNLQNFSTDDLIIKSNEKFTAAKNSLINVIKSGFEQ-NE 655
Query: 459 GIGKWYARTEQINELQAAC 515
I ++ +T + L C
Sbjct: 656 FINPYFLQTNYLKNLLCCC 674
>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1877
Score = 25.8 bits (54), Expect = 6.0
Identities = 17/75 (22%), Positives = 35/75 (46%), Gaps = 8/75 (10%)
Frame = +1
Query: 61 PDKVPEAEDKPLNVVDNLSSEQELIDQANTIKD----IDN----SLRANKKEVIDIPVKV 216
PD A + L++ DN+SS NTI + ID+ +L N +++ + + +
Sbjct: 434 PDSYLAAPKERLSISDNMSSSSSQTATVNTISNYLNVIDSVREIALTVNDEKIYGLAISL 493
Query: 217 IVEEIKPSLKSDLKT 261
++++ S + T
Sbjct: 494 LIQKFSRKFDSRVST 508
>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 25.4 bits (53), Expect = 7.9
Identities = 16/46 (34%), Positives = 28/46 (60%)
Frame = +1
Query: 115 SSEQELIDQANTIKDIDNSLRANKKEVIDIPVKVIVEEIKPSLKSD 252
S+ +EL+D+ KD+ +A K EV+D+ VK E+++ KS+
Sbjct: 465 STYKELMDRVQN-KDLLCQEQARKLEVLDLNVKSSREQLQYVSKSN 509
>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
Hip3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1630
Score = 25.4 bits (53), Expect = 7.9
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = +3
Query: 375 AEKIVSSVKNDINTAEIALRQGFQEVSDGIGKWYARTEQINELQAACNISKK 530
A K S+ + D N +EI + + +W + TEQ+ ELQ +C S +
Sbjct: 556 ALKFSSNDQKDDNVSEIPT-ESLEYKKLRCLRWKSLTEQVVELQPSCKSSSQ 606
>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 199
Score = 25.4 bits (53), Expect = 7.9
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +1
Query: 319 PGPRSIKSTKHRILNTTKMLKKSFLPSKMTLTQRKSLFVKASRKCQTV 462
P + + K I +K++ + LP+ +T Q K LFVK+ C+ V
Sbjct: 39 PAVNTASALKSVISEESKIIVSN-LPTDVTEAQVKELFVKSIGPCKRV 85
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,458,523
Number of Sequences: 5004
Number of extensions: 46949
Number of successful extensions: 215
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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