Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20702
         (701 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    25   0.70 
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    25   0.70 
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    25   0.70 
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    23   3.7  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   8.6  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 25.0 bits (52), Expect = 0.70
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = -1

Query: 140 WSMSSCSLDKLSTTFKGLSSASGTLSGMELRV 45
           W+M+  + D+ +   KGLS    +++G  +R+
Sbjct: 141 WTMTMIAFDRYNVIVKGLSGKPLSINGALIRI 172


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 25.0 bits (52), Expect = 0.70
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = -1

Query: 140 WSMSSCSLDKLSTTFKGLSSASGTLSGMELRV 45
           W+M+  + D+ +   KGLS    +++G  +R+
Sbjct: 107 WTMTMIAFDRYNVIVKGLSGKPLSINGALIRI 138


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 25.0 bits (52), Expect = 0.70
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = -1

Query: 140 WSMSSCSLDKLSTTFKGLSSASGTLSGMELRV 45
           W+M+  + D+ +   KGLS    +++G  +R+
Sbjct: 17  WTMTMIAFDRYNVIVKGLSGKPLSINGALIRI 48


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 8/31 (25%), Positives = 17/31 (54%)
 Frame = +1

Query: 82  EDKPLNVVDNLSSEQELIDQANTIKDIDNSL 174
           E  P+ +++NL +  E ID+    ++   S+
Sbjct: 333 ETMPMELIENLRNHPEYIDETRNYQECKCSI 363


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/39 (20%), Positives = 23/39 (58%)
 Frame = +1

Query: 394 PSKMTLTQRKSLFVKASRKCQTVLENGTLVPSKLTSSRQ 510
           P  + +  R++L +   ++C+ +LE+  +  + L +S++
Sbjct: 451 PLDLAIPVRETLILPPRKRCKMILESMEIERNGLIASQR 489


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,249
Number of Sequences: 438
Number of extensions: 3294
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)