Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20702
(701 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g62860.1 68414.m07098 pentatricopeptide (PPR) repeat-containi... 33 0.24
At2g30780.1 68415.m03753 pentatricopeptide (PPR) repeat-containi... 31 0.56
At5g65910.1 68418.m08296 BSD domain-containing protein contains ... 31 0.74
At1g66170.1 68414.m07511 PHD finger family protein (MMD1) contai... 31 0.74
At1g51070.1 68414.m05741 basic helix-loop-helix (bHLH) family pr... 30 1.7
At3g19860.1 68416.m02515 basic helix-loop-helix (bHLH) family pr... 29 3.9
At3g14490.1 68416.m01835 terpene synthase/cyclase family protein... 29 3.9
At1g12380.1 68414.m01431 expressed protein 29 3.9
At1g03830.1 68414.m00364 guanylate-binding family protein contai... 29 3.9
At3g61390.2 68416.m06872 U-box domain-containing protein several... 28 5.2
At2g45560.2 68415.m05666 cytochrome P450 family protein 28 6.9
At2g45560.1 68415.m05665 cytochrome P450 family protein 28 6.9
At2g28590.1 68415.m03474 protein kinase family protein contains ... 28 6.9
At4g03430.1 68417.m00470 pre-mRNA splicing factor-related simila... 27 9.1
At1g64320.1 68414.m07289 myosin heavy chain-related similar to m... 27 9.1
At1g11670.1 68414.m01340 MATE efflux family protein similar to r... 27 9.1
>At1g62860.1 68414.m07098 pentatricopeptide (PPR) repeat-containing
protein low similarity to fertility restorer [Petunia x
hybrida] GI:22128587; contains Pfam profile PF01535: PPR
repeat
Length = 534
Score = 32.7 bits (71), Expect = 0.24
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
Frame = -1
Query: 278 FIRHFNVFKSLFNDGLISSTITLTGMSMTSFLFARRLLSMSLMVLAWSMSSCSLD--KLS 105
F+R +++ + G+I ST+T M + F RL MV + CS D S
Sbjct: 372 FLRAEDIYLEMLCKGIIPSTVTYNSM-VDGFCKQNRLEEARQMVDSMVSEGCSPDVVTFS 430
Query: 104 TTFKGLSSASGTLSGMEL 51
T KG A G+EL
Sbjct: 431 TLIKGYCKAGRVDDGLEL 448
>At2g30780.1 68415.m03753 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 452
Score = 31.5 bits (68), Expect = 0.56
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = +3
Query: 348 TQNPEHHEDAEKIVSSVKNDINTAEIALRQGFQEVSDGIGKWYART 485
T P HH D + VS +K+++ T + ++ FQ V D G+W RT
Sbjct: 20 TSLPAHHTDLVQRVSILKDELLTIGNS-KEKFQNVLDQKGQWLFRT 64
>At5g65910.1 68418.m08296 BSD domain-containing protein contains
Pfam profile PF03909: BSD domain
Length = 432
Score = 31.1 bits (67), Expect = 0.74
Identities = 13/52 (25%), Positives = 23/52 (44%)
Frame = +3
Query: 309 LRNPGPPQHQEHETQNPEHHEDAEKIVSSVKNDINTAEIALRQGFQEVSDGI 464
L P + Q P+H E+ E +++ +KND R G ++S +
Sbjct: 64 LSQPSSSPDLQERNQTPDHPEEDEDLIAGIKNDFAEIGGRFRTGISKLSGNL 115
>At1g66170.1 68414.m07511 PHD finger family protein (MMD1) contains
Pfam profile: PF00628: PHD-finger
Length = 704
Score = 31.1 bits (67), Expect = 0.74
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -2
Query: 505 WSSLICSVRAYHFPIPSDTSW 443
WS+ S R YHF IP DT W
Sbjct: 100 WSNHFVSKRKYHFIIPIDTEW 120
>At1g51070.1 68414.m05741 basic helix-loop-helix (bHLH) family
protein similar to bHLH transcription factor GI:3757520
from [Arabidopsis thaliana]
Length = 226
Score = 29.9 bits (64), Expect = 1.7
Identities = 22/96 (22%), Positives = 48/96 (50%)
Frame = +1
Query: 61 PDKVPEAEDKPLNVVDNLSSEQELIDQANTIKDIDNSLRANKKEVIDIPVKVIVEEIKPS 240
P + P+ DK + D + + D+A +KD+++SL+ KE+ D K + + K
Sbjct: 95 PGRTPKT-DKVAIINDAIRMVNQARDEAQKLKDLNSSLQEKIKELKD--EKNELRDEKQK 151
Query: 241 LKSDLKTLKCRMKMRKSRGL*SI*EIPGPRSIKSTK 348
LK + + + ++K K++ +P P+++ +
Sbjct: 152 LKVEKERIDQQLKAIKTQPQPQPCFLPNPQTLSQAQ 187
>At3g19860.1 68416.m02515 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 284
Score = 28.7 bits (61), Expect = 3.9
Identities = 19/67 (28%), Positives = 32/67 (47%)
Frame = +1
Query: 85 DKPLNVVDNLSSEQELIDQANTIKDIDNSLRANKKEVIDIPVKVIVEEIKPSLKSDLKTL 264
DK + D + +EL + N +K +L +E+ K + E K SLKSD++ L
Sbjct: 40 DKATILTDTVQLLKELTSEVNKLKSEYTALTDESRELTQ--EKNDLREEKTSLKSDIENL 97
Query: 265 KCRMKMR 285
+ + R
Sbjct: 98 NLQYQQR 104
>At3g14490.1 68416.m01835 terpene synthase/cyclase family protein
contains Pfam profile: PF01397 terpene synthase family
Length = 601
Score = 28.7 bits (61), Expect = 3.9
Identities = 25/79 (31%), Positives = 41/79 (51%)
Frame = +3
Query: 387 VSSVKNDINTAEIALRQGFQEVSDGIGKWYARTEQINELQAACNISKKISALRYQS*MKR 566
V +KNDINT E + +G EV+ G+ Y + +++ +A ++ KI + Y+ M+
Sbjct: 492 VFRIKNDINTFEQEMSRG--EVAKGL-NCYMKQHGVSKEEAIGEMN-KIYSNYYKIIMEE 547
Query: 567 YILLNQLTPSRPLLSRNAN 623
Y L RP+L R N
Sbjct: 548 Y--LTTTAVPRPILVRCLN 564
>At1g12380.1 68414.m01431 expressed protein
Length = 793
Score = 28.7 bits (61), Expect = 3.9
Identities = 17/68 (25%), Positives = 35/68 (51%)
Frame = +3
Query: 297 PLVDLRNPGPPQHQEHETQNPEHHEDAEKIVSSVKNDINTAEIALRQGFQEVSDGIGKWY 476
PL +R+ + +PE +D +K+++ + + + A IAL + + ++G+ Y
Sbjct: 609 PLYLIRDSSGKYLPPFKCLSPEQEKDVDKLITRLVSR-DEAHIALMELMKWRTEGLDPMY 667
Query: 477 ARTEQINE 500
AR Q+ E
Sbjct: 668 ARAVQMKE 675
>At1g03830.1 68414.m00364 guanylate-binding family protein contains
Pfam domains PF02263: Guanylate-binding protein,
N-terminal domain and PF02841: Guanylate-binding
protein, C-terminal domain
Length = 991
Score = 28.7 bits (61), Expect = 3.9
Identities = 17/64 (26%), Positives = 33/64 (51%)
Frame = +1
Query: 100 VVDNLSSEQELIDQANTIKDIDNSLRANKKEVIDIPVKVIVEEIKPSLKSDLKTLKCRMK 279
V + +++ +E + QA+T +D LRA V+D K+I E+ + + R +
Sbjct: 536 VTEKIAAMEEKLKQASTTED---GLRAEFSRVLDEKEKIITEKAAKLATLEQQLASTRAE 592
Query: 280 MRKS 291
++KS
Sbjct: 593 LKKS 596
>At3g61390.2 68416.m06872 U-box domain-containing protein several
hypothetical proteins - Arabidopsis thaliana
Length = 435
Score = 28.3 bits (60), Expect = 5.2
Identities = 11/58 (18%), Positives = 23/58 (39%)
Frame = +3
Query: 330 QHQEHETQNPEHHEDAEKIVSSVKNDINTAEIALRQGFQEVSDGIGKWYARTEQINEL 503
+ +E E H E + + + +DI GF + I +W+ R + + +
Sbjct: 339 KREEEEASTSNHREPPQYFICPITHDIMEDPHVAADGFTYEGEAISRWFERGHETSPM 396
>At2g45560.2 68415.m05666 cytochrome P450 family protein
Length = 322
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = -3
Query: 372 LRGVQDSVFRALDAAGARDFLNRLEAS*FPHFHPALQRFQITLQR 238
+ GVQD+V +DAAG D N F ++ F++ +R
Sbjct: 208 INGVQDTVISVMDAAGTPDAANYFPFLRFLDLQGNVKTFKVCTER 252
>At2g45560.1 68415.m05665 cytochrome P450 family protein
Length = 512
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = -3
Query: 372 LRGVQDSVFRALDAAGARDFLNRLEAS*FPHFHPALQRFQITLQR 238
+ GVQD+V +DAAG D N F ++ F++ +R
Sbjct: 208 INGVQDTVISVMDAAGTPDAANYFPFLRFLDLQGNVKTFKVCTER 252
>At2g28590.1 68415.m03474 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 424
Score = 27.9 bits (59), Expect = 6.9
Identities = 19/63 (30%), Positives = 26/63 (41%)
Frame = +1
Query: 328 RSIKSTKHRILNTTKMLKKSFLPSKMTLTQRKSLFVKASRKCQTVLENGTLVPSKLTSSR 507
R+ KS K TTK F P K+T+ + + S C V G + +T
Sbjct: 6 RTPKSNKRSDTKTTK--NNDFTPKKLTVNANRDKLTQPSSDCLKVSICGDVSKEIVTKKD 63
Query: 508 QLA 516
QLA
Sbjct: 64 QLA 66
>At4g03430.1 68417.m00470 pre-mRNA splicing factor-related similar
to pre-mRNA splicing factor pre-mRNA splicing factor
prp1 (SP:Q12381) [Fission yeast]
Length = 1029
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/40 (27%), Positives = 20/40 (50%)
Frame = +3
Query: 390 SSVKNDINTAEIALRQGFQEVSDGIGKWYARTEQINELQA 509
+ +++D+ LR+G + + D + W A E NE A
Sbjct: 458 AKLEHDVENKSRVLRKGLEHIPDSVRLWKAVVELANEEDA 497
>At1g64320.1 68414.m07289 myosin heavy chain-related similar to
myosin heavy chain (GI:4249703) [Rana catesbeiana];
similar to smooth muscle myosin heavy chain SM2
(GI:2352945) [Homo sapiens]
Length = 476
Score = 27.5 bits (58), Expect = 9.1
Identities = 30/118 (25%), Positives = 56/118 (47%)
Frame = +1
Query: 130 LIDQANTIKDIDNSLRANKKEVIDIPVKVIVEEIKPSLKSDLKTLKCRMKMRKSRGL*SI 309
L+DQ N +K SLR+ K E + ++ VEE+ + K LK+LK + ++R I
Sbjct: 94 LMDQVNGMKHELESLRSQKDE-SEAKLEKKVEEVTET-KMQLKSLKEETEEERNRLSEEI 151
Query: 310 *EIPGPRSIKSTKHRILNTTKMLKKSFLPSKMTLTQRKSLFVKASRKCQTVLENGTLV 483
++ G + + L++ M K+ +M +K L + S + + V E ++
Sbjct: 152 DQLKGENQMLHRRISELDSLHMEMKTKSAHEMEDASKK-LDTEVSDQKKLVKEQDDII 208
>At1g11670.1 68414.m01340 MATE efflux family protein similar to
ripening regulated protein DDTFR18 [Lycopersicon
esculentum] GI:12231296; contains Pfam profile PF01554:
Uncharacterized membrane protein family; EST gb|W43487
comes from this gene
Length = 503
Score = 27.5 bits (58), Expect = 9.1
Identities = 19/49 (38%), Positives = 25/49 (51%)
Frame = -1
Query: 206 GMSMTSFLFARRLLSMSLMVLAWSMSSCSLDKLSTTFKGLSSASGTLSG 60
GMSM + +FA RL SM L + S ++ L G+ SA TL G
Sbjct: 70 GMSMLTRIFAGRLGSMQLAAASLGNSGFNMFTLGLML-GMGSAVETLCG 117
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,878,780
Number of Sequences: 28952
Number of extensions: 244928
Number of successful extensions: 969
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 967
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -