Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20701
         (686 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581     29   3.5  
01_07_0197 + 41912207-41912652,41913226-41913800,41913828-419157...    29   3.5  
01_05_0118 + 18335065-18335553                                         29   3.5  
07_03_0939 + 22758169-22758402                                         29   4.6  
07_03_0626 + 20060013-20060273,20061017-20061274                       28   6.0  
12_01_0941 - 9316051-9316056,9316747-9317082                           28   8.0  
12_01_0935 - 9277421-9277584,9277908-9278111,9280742-9280982,928...    28   8.0  
11_06_0189 - 21039217-21039348,21039480-21039738,21039841-210400...    28   8.0  

>05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581
          Length = 311

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +3

Query: 375 GHLVHALGRAAGGAN*P-SAGLCLNASKAEASLA 473
           G LV  L R  GG     SAG+C   S+ +ASLA
Sbjct: 203 GRLVETLARDGGGGGGAYSAGVCFYGSRMDASLA 236


>01_07_0197 +
           41912207-41912652,41913226-41913800,41913828-41915748,
           41915836-41916049,41916143-41916394,41916469-41916528,
           41916646-41916776,41916898-41917012,41917084-41917239
          Length = 1289

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +2

Query: 104 YKEFLARG-ARKVTTGITGLWQPSVHSDVAF*SFDVG 211
           YK F A G  RKV  GIT  + PS+  D+AF S  +G
Sbjct: 633 YKIFQAFGLVRKVEKGITRWYYPSMLDDLAFDSAALG 669


>01_05_0118 + 18335065-18335553
          Length = 162

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +2

Query: 503 APESGGSKQCDFTSRVSHSKRETRRRSPFGSR 598
           AP +GG+++ +    ++  K  T RR+ FG+R
Sbjct: 28  APAAGGTREPEHARLIARRKESTYRRTAFGNR 59


>07_03_0939 + 22758169-22758402
          Length = 77

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +2

Query: 455 GRSQPSRIRQGYAHCGAPESGGSKQCDFTSRVSHS 559
           GRS   R+   +  CGA +  G++  DF ++  HS
Sbjct: 20  GRSSQKRMAHSHPPCGAGDLEGAESADFLAQGVHS 54


>07_03_0626 + 20060013-20060273,20061017-20061274
          Length = 172

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -3

Query: 474 RLGWLRP*RRSGIIPRMVSSHHRP 403
           RLGWLRP R S ++P   S    P
Sbjct: 32  RLGWLRPSRLSAVVPASESGRVGP 55


>12_01_0941 - 9316051-9316056,9316747-9317082
          Length = 113

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = +3

Query: 462 ASLAESGKDMLTVEPRSREALNNVTLLVAFRIQNARRDVEAHLDRGD 602
           ASLAE     + + P     ++ + +L+AF+ Q AR  +EA LD  D
Sbjct: 24  ASLAEGHPTFVLLRPEIGLNIDKLQILLAFKAQGARL-LEASLDDHD 69


>12_01_0935 -
           9277421-9277584,9277908-9278111,9280742-9280982,
           9282165-9282494
          Length = 312

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = +3

Query: 462 ASLAESGKDMLTVEPRSREALNNVTLLVAFRIQNARRDVEAHLDRGD 602
           ASLAE     + + P     ++ + +L+AF+ Q AR  +EA LD  D
Sbjct: 22  ASLAEGHPTFVLLRPEIGLDIDKLQILLAFKAQGARL-LEASLDDHD 67


>11_06_0189 -
           21039217-21039348,21039480-21039738,21039841-21040004,
           21040371-21040533,21040615-21042137
          Length = 746

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
 Frame = -2

Query: 532 TLFRASRLRGSTVSISLPDSARLASALE---AFRHNPAD 425
           T+ R  R  GS  S  LPD   LASA +   +FR++P D
Sbjct: 60  TVGRYHRAAGSCQSDVLPDEQSLASAFDMVLSFRNHPVD 98


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,438,183
Number of Sequences: 37544
Number of extensions: 411063
Number of successful extensions: 911
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 911
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)