Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20700
         (596 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm...    49   5e-07
SPBC3E7.10 |fma1||methionine aminopeptidase Fma1 |Schizosaccharo...    29   0.52 
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c...    28   1.2  
SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dp...    26   4.8  
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1...    25   6.3  
SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc...    25   8.4  

>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
           intermediate chain Dic1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 544

 Score = 49.2 bits (112), Expect = 5e-07
 Identities = 25/81 (30%), Positives = 43/81 (53%)
 Frame = +3

Query: 354 TFEEERWSRGRCVTCLDWSTFHPELVLASYYNSDDAPHDPDGVCLVWNTKFKRPLPEDIF 533
           TF++E+ +    V  + +S+F  EL++ SY    +A     G+ +VWN ++K   PE + 
Sbjct: 183 TFQDEKITLNSVVNSISYSSFFEELLITSYAKPKEALRTR-GLAIVWNQRWKNS-PESVL 240

Query: 534 HCQSAVMSATFAKFHPNLILG 596
             +S +     + FHP LI G
Sbjct: 241 KARSEITVCKPSPFHPQLIAG 261


>SPBC3E7.10 |fma1||methionine aminopeptidase Fma1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 379

 Score = 29.1 bits (62), Expect = 0.52
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = +3

Query: 414 FHPELVLASYYNSDDAPHDPDGVCLVWNTK 503
           FH +L   +YY  D A  +PD VCLV NT+
Sbjct: 217 FHGDLN-ETYYVGDKAKANPDLVCLVENTR 245


>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 807

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +3

Query: 399 LDWSTFHPELVLASYYNSDDAPHDPDGVCLVWNTKFKRPL 518
           L+ +TF+P L    +  S  A    DG   +WNT   RP+
Sbjct: 281 LECATFNPYLYEDPFQKSIIASAAHDGCVSIWNTACARPM 320


>SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dpb2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 594

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 335 PSFPGSYLRRGTLVARPMRDLPG 403
           PSF GS+ + GT    P+R+L G
Sbjct: 199 PSFSGSFSQTGTYQLTPIRNLLG 221


>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
           Epe1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 948

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 479 SVPGLEHQVQKTTPRRHIPLSVGGYERHVCE 571
           S   L+ Q+QK  P+  +  SVG  E+   E
Sbjct: 805 SSSNLKQQIQKVVPQNSLEFSVGEKEKKAAE 835


>SPCP1E11.04c |pal1||membrane associated protein Pal1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 425

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +2

Query: 11  RAKETTRRPPSTVNCPRGYCSTACPPSRRSNPQSP 115
           R+     R P+T+N P  Y S +   +RRS   SP
Sbjct: 310 RSASMMSRTPNTLNRPSNYRSHSSMGTRRSPLNSP 344


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,068,216
Number of Sequences: 5004
Number of extensions: 36167
Number of successful extensions: 109
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)