Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20700
         (596 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0748 - 6728221-6728305,6728788-6728842,6729202-6729289,672...    30   1.2  
05_01_0028 + 182528-183852,183967-184127,184872-185116,185330-18...    30   1.6  
11_04_0220 + 14991666-14992892                                         29   2.8  
06_01_0978 + 7595641-7595843,7595952-7596072,7596176-7596253,759...    29   2.8  
11_03_0066 + 9529969-9530166,9530271-9530450,9530559-9531287,953...    28   6.5  
04_04_0520 - 25871932-25872074,25872234-25872294,25873267-258733...    27   8.6  
03_05_0407 - 23906388-23906966,23907028-23907915,23908141-239087...    27   8.6  
02_05_1013 - 33502989-33503174                                         27   8.6  

>12_01_0748 -
           6728221-6728305,6728788-6728842,6729202-6729289,
           6729681-6729818,6729978-6730142,6730235-6730354,
           6730555-6730631,6730738-6731113,6731523-6732617
          Length = 732

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = -3

Query: 495 SRPGTLRQGRAARRHCCSTRPAPVPGETWTSP 400
           SR   L QG+  R H  S+ P  V GE W  P
Sbjct: 615 SRAHRLAQGKVIRLHLHSSFPVQVDGEPWIQP 646


>05_01_0028 +
           182528-183852,183967-184127,184872-185116,185330-186073
          Length = 824

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/29 (48%), Positives = 15/29 (51%)
 Frame = +2

Query: 32  RPPSTVNCPRGYCSTACPPSRRSNPQSPM 118
           RPPS +  PRG      PP RR  P  PM
Sbjct: 367 RPPS-IPQPRGRAPNPSPPKRRPQPPEPM 394


>11_04_0220 + 14991666-14992892
          Length = 408

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 18/48 (37%), Positives = 22/48 (45%)
 Frame = -3

Query: 504 TWCSRPGTLRQGRAARRHCCSTRPAPVPGETWTSPGRSRIGRATSVPL 361
           T+   P TL   R + R     RP P PG T + P   R  RA+  PL
Sbjct: 351 TFLGGPRTLSTARKSTRPP-GKRPKPDPGATTSEPWGLRFARASDHPL 397


>06_01_0978 +
           7595641-7595843,7595952-7596072,7596176-7596253,
           7596371-7596436,7596556-7596688,7596774-7596841,
           7596930-7597002,7597097-7597158,7597240-7597633,
           7597768-7597832
          Length = 420

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +1

Query: 304 EKTRLTTSQRPVFPWFVPSKRNAGRAADA*PAWTGP 411
           EKT+   S++P F W   +KRN G      P  T P
Sbjct: 267 EKTQQADSRKPAFRWLGQAKRNEGVTVALPPTKTLP 302


>11_03_0066 +
           9529969-9530166,9530271-9530450,9530559-9531287,
           9531554-9531706,9531803-9532238,9532322-9532501,
           9532643-9532889,9533090-9533123,9533385-9533489,
           9533833-9533967,9534220-9534399,9534504-9534626
          Length = 899

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 468 DPDGVCLVWNTKFKRPLPEDIFHC 539
           DPD +CL    + K P+  D+ HC
Sbjct: 221 DPDSMCLDLGGRGKLPVTPDVVHC 244


>04_04_0520 -
           25871932-25872074,25872234-25872294,25873267-25873389,
           25873465-25873531,25873710-25873780,25873853-25874004,
           25874082-25874158,25874323-25874435,25874503-25874598,
           25874703-25874734,25874838-25874884,25875015-25875068,
           25875212-25875289,25875607-25875698
          Length = 401

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +3

Query: 387 CVTCLDWSTFHPELVLASYYNSDDAPHDPDGVCLV 491
           C  CLD + F      A YY  D+AP     VC+V
Sbjct: 137 CTYCLDLTIFKQ----AHYYEDDNAPTGTCAVCIV 167


>03_05_0407 -
           23906388-23906966,23907028-23907915,23908141-23908753,
           23908858-23909021
          Length = 747

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 4/45 (8%)
 Frame = +3

Query: 441 YYNSDDAPHDPDGVC----LVWNTKFKRPLPEDIFHCQSAVMSAT 563
           YY  D+   DP  VC      WN   + P  ED   C S   S++
Sbjct: 664 YYEQDEGGFDPHWVCEFFRFYWNEGMRLPSIEDCPGCTSFAESSS 708


>02_05_1013 - 33502989-33503174
          Length = 61

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +3

Query: 357 FEEERWSRGRCVTCLDWSTFHPE 425
           F+E     G  V CLD S FHPE
Sbjct: 11  FKEVMTPNGTTVACLDESGFHPE 33


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,559,046
Number of Sequences: 37544
Number of extensions: 318444
Number of successful extensions: 1070
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1027
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1069
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)